Detection of Interactions between Proteins by Using Legendre Moments Descriptor to Extract Discriminatory Information Embedded in PSSM

PCVMZM: Using the Probabilistic Classification Vector Machines Model Combined with a Zernike Moments Descriptor to Predict Protein–Protein Interactions from Protein Sequences

(2017) Yanbin Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iRNA-2methyl: Identify RNA 2'-O-methylation Sites by Incorporating Sequence-Coupled Effects into General PseKNC and Ensemble Classifier

(2017) Wang-Ren Qiu et al.   Medicinal Chemistry

Predicting protein–protein interactions from protein sequences by a stacked sparse autoencoder deep neural network

(2017) Yan-Bin Wang et al.   Molecular BioSystems

iRSpot-EL: identify recombination spots with an ensemble learning approach

(2016) Bin Liu et al.   BIOINFORMATICS

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework

(2016) Bin Liu et al.   BIOINFORMATICS

iPhos-PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory

(2016) Wang-Ren Qiu et al.   Molecular Informatics

iPPBS-Opt: A Sequence-Based Ensemble Classifier for Identifying Protein-Protein Binding Sites by Optimizing Imbalanced Training Datasets

(2016) Jianhua Jia et al.   MOLECULES

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

iPhos-PseEn: Identifying phosphorylation sites in proteins by fusing different pseudo components into an ensemble classifier

(2016) Wang-Ren Qiu et al.   Oncotarget

iHyd-PseCp: Identify hydroxyproline and hydroxylysine in proteins by incorporating sequence-coupled effects into general PseAAC

(2016) Wang-Ren Qiu et al.   Oncotarget

HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy

(2015) Quan Zou et al.   BIOINFORMATICS

Detection of Interactions between Proteins through Rotation Forest and Local Phase Quantization Descriptors

(2015) Leon Wong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of protein-protein binding sites by incorporating the physicochemical properties and stationary wavelet transforms into pseudo amino acid composition

(2015) Jianhua Jia et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

iPPI-Esml: An ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC

(2015) Jianhua Jia et al.   JOURNAL OF THEORETICAL BIOLOGY

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects

(2014) Bin Liu et al.   BIOINFORMATICS

Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set

(2014) Zhu-Hong You et al.   BMC BIOINFORMATICS

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Protein-Protein Interactions Detection by Integrating Big Biosensing Data with Computational Model

(2014) Zhu-Hong You et al.   Biomed Research International

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

(2013) Zhu-Hong You et al.   BMC BIOINFORMATICS

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

miRClassify: An advanced web server for miRNA family classification and annotation

(2013) Quan Zou et al.   COMPUTERS IN BIOLOGY AND MEDICINE

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Efficient Probabilistic Classification Vector Machine With Incremental Basis Function Selection

(2013) Huanhuan Chen et al.   IEEE Transactions on Neural Networks and Learning Systems

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition

(2012) Alok Sharma et al.   JOURNAL OF THEORETICAL BIOLOGY

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Affine Legendre Moment Invariants for Image Watermarking Robust to Geometric Distortions

(2011) Hui Zhang et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network

(2010) Zhu-Hong You et al.   BMC BIOINFORMATICS

On Position-Specific Scoring Matrix for Protein Function Prediction

(2010) Jong Cheol Jeong et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Prediction of Protein-Protein Interactions from Protein Sequence Using Local Descriptors

(2010) Lei Yang et al.   PROTEIN AND PEPTIDE LETTERS

Blurred Image Recognition by Legendre Moment Invariants

(2009) Hui Zhang et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Probabilistic Classification Vector Machines

(2009) Huanhuan Chen et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

(2009) John A. Capra et al.   PLoS Computational Biology

Real value prediction of protein solvent accessibility using enhanced PSSM features

(2008) Darby Chang et al.   BMC BIOINFORMATICS

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH