HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy

E-MEM: efficient computation of maximal exact matches for very large genomes

(2014) Nilesh Khiste et al.   BIOINFORMATICS

Fast alignment-free sequence comparison using spaced-word frequencies

(2014) Chris-Andre Leimeister et al.   BIOINFORMATICS

BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm

(2014) Joshua Loving et al.   BIOINFORMATICS

Cloud4Psi: cloud computing for 3D protein structure similarity searching

(2014) D. Mrozek et al.   BIOINFORMATICS

A partition-based method for string similarity joins with edit-distance constraints

(2013) Guoliang Li et al.   ACM TRANSACTIONS ON DATABASE SYSTEMS

Lnetwork: an efficient and effective method for constructing phylogenetic networks

(2013) Juan Wang et al.   BIOINFORMATICS

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

AGP: A Multimethods Web Server for Alignment-Free Genome Phylogeny

(2013) J. Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

(2011) Xiaolin Hao et al.   BIOINFORMATICS

Hobbes: optimized gram-based methods for efficient read alignment

(2011) Athena Ahmadi et al.   NUCLEIC ACIDS RESEARCH

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

(2011) Julie D. Thompson et al.   PLoS One

Integrative classification and analysis of multiple arrayCGH datasets with probe alignment

(2010) Ze Tian et al.   BIOINFORMATICS

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities

(2010) Y. Liu et al.   BIOINFORMATICS

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

The HapMap and Genome-Wide Association Studies in Diagnosis and Therapy

(2009) Teri A. Manolio et al.   Annual Review of Medicine

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

(2009) Bin Liu et al.   BMC BIOINFORMATICS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

(2009) Gregory E. Sims et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

1000 Genomes project

(2008) Nayanah Siva   NATURE BIOTECHNOLOGY