Microbiome change by symbiotic invasion in lichens

Molecular phylogeny and ultrastructure of the lichen microalga Asterochloris mediterranea sp. nov. from Mediterranean and Canary Islands ecosystems

(2015) Patricia Moya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Assembling the challenging puzzle of algal biodiversity: species delimitation within the genusAsterochloris(Trebouxiophyceae, Chlorophyta)

(2015) Pavel Škaloud et al.   JOURNAL OF PHYCOLOGY

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

(2015) Armin Erlacher et al.   Frontiers in Microbiology

Improved appreciation of the functioning and importance of biological soil crusts in Europe: the Soil Crust International Project (SCIN)

(2014) Burkhard Büdel et al.   BIODIVERSITY AND CONSERVATION

Analyses of dryland biological soil crusts highlight lichens as an important regulator of microbial communities

(2014) Stefanie Maier et al.   BIODIVERSITY AND CONSERVATION

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

(2014) Martin Grube et al.   ISME Journal

Molecular phylogeny and symbiotic selectivity of the green algal genusDictyochloropsiss.l. (Trebouxiophyceae): a polyphyletic and widespread group forming photobiont-mediated guilds in the lichen family Lobariaceae

(2014) Francesco Dal Grande et al.   NEW PHYTOLOGIST

Cooperation, communication, and co-evolution: grand challenges in microbial symbiosis research

(2014) Nicole S. Webster   Frontiers in Microbiology

Localization of bacteria in lichens from Alpine soil crusts by fluorescence in situ hybridization

(2013) Lucia Muggia et al.   APPLIED SOIL ECOLOGY

Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome

(2013) Kelvin Li et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

Host-parasite interaction and microbiome response: effects of fungal infections on the bacterial community of the Alpine lichenSolorina crocea

(2012) Martin Grube et al.   FEMS MICROBIOLOGY ECOLOGY

Alphaproteobacterial communities in geographically distant populations of the lichenCetraria aculeata

(2012) Christian Printzen et al.   FEMS MICROBIOLOGY ECOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome

(2011) Brendan P. Hodkinson et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial-Fungal Interactions: Hyphens between Agricultural, Clinical, Environmental, and Food Microbiologists

(2011) P. Frey-Klett et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Do photobionts influence the ecology of lichens? A case study of environmental preferences in symbiotic green alga Asterochloris (Trebouxiophyceae)

(2011) ONDŘEJ PEKSA et al.   MOLECULAR ECOLOGY

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales

(2010) Brendan P. Hodkinson et al.   SYMBIOSIS

Do lichens domesticate photobionts like farmers domesticate crops? Evidence from a previously unrecognized lineage of filamentous cyanobacteria

(2009) Robert Lücking et al.   AMERICAN JOURNAL OF BOTANY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Photobiont diversity in lichens from metal-rich substrata based on ITS rDNA sequences

(2009) Martin Bačkor et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Species-specific structural and functional diversity of bacterial communities in lichen symbioses

(2009) Martin Grube et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta)

(2009) Pavel Skaloud et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria

(2008) Massimiliano Cardinale et al.   FEMS MICROBIOLOGY ECOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION