Ecological and Genetic Barriers Differentiate Natural Populations ofSaccharomyces cerevisiae

HTSeq--a Python framework to work with high-throughput sequencing data

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Chromosomal Rearrangements as a Major Mechanism in the Onset of Reproductive Isolation in Saccharomyces cerevisiae

(2014) Jing Hou et al.   CURRENT BIOLOGY

High-Efficiency Genome Editing and Allele Replacement in Prototrophic and Wild Strains of Saccharomyces

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Chromosomal variation segregates within incipient species and correlates with reproductive isolation

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QTL Dissection of Lag Phase in Wine Fermentation Reveals a New Translocation Responsible for Saccharomyces cerevisiae Adaptation to Sulfite

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A Single Gene Affects Both Ecological Divergence and Mate Choice in Drosophila

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Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks

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Molecular Components of Nitrate and Nitrite Efflux in Yeast

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Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

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Mixing of vineyard and oak-tree ecotypes ofSaccharomyces cerevisiaein North American vineyards

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Genomic Sequence Diversity and Population Structure of Saccharomyces cerevisiae Assessed by RAD-seq

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Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

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Surprisingly diverged populations ofSaccharomyces cerevisiaein natural environments remote from human activity

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Genetic Architecture of Highly Complex Chemical Resistance Traits across Four Yeast Strains

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Bread, beer and wine: Yeast domestication in the Saccharomyces sensu stricto complex

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Revealing the genetic structure of a trait by sequencing a population under selection

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Assessing the complex architecture of polygenic traits in diverged yeast populations

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

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Genomics of adaptation and speciation in cichlid fishes: recent advances and analyses in African and Neotropical lineages

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Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution inSaccharomyces cerevisiae

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Magic traits in speciation: ‘magic’ but not rare?

(2011) Maria R. Servedio et al.   TRENDS IN ECOLOGY & EVOLUTION

Trait Variation in Yeast Is Defined by Population History

(2011) Jonas Warringer et al.   PLoS Genetics

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Wine Yeast Strain-Dependent Expression of Genes Implicated in Sulfide Production in Response to Nitrogen Availability

(2010) A. Mendes-Ferreira   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

A sulphite-inducible form of the sulphite efflux gene SSU1 in a Saccharomyces cerevisiae wine yeast

(2010) T. Nardi et al.   MICROBIOLOGY-SGM

Dissection of genetically complex traits with extremely large pools of yeast segregants

(2010) Ian M. Ehrenreich et al.   NATURE

Incipient Balancing Selection through Adaptive Loss of Aquaporins in Natural Saccharomyces cerevisiae Populations

(2010) Jessica L. Will et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Optimized fermentation of grape juice by laboratory strains ofSaccharomyces cerevisiae

(2009) Michael J. Harsch et al.   FEMS YEAST RESEARCH

Quantitative phenotyping via deep barcode sequencing

(2009) A. M. Smith et al.   GENOME RESEARCH

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

(2009) Joseph Schacherer et al.   NATURE

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Saccharomyces cerevisiae: Population Divergence and Resistance to Oxidative Stress in Clinical, Domesticated and Wild Isolates

(2009) Stephanie Diezmann et al.   PLoS One

Genetic Interactions Between Transcription Factors Cause Natural Variation in Yeast

(2009) J. Gerke et al.   SCIENCE

Variations in Stress Sensitivity and Genomic Expression in Diverse S. cerevisiae Isolates

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