Rapid, broad-scale gene expression evolution in experimentally harvested fish populations

Human behaviour as a long-term ecological driver of non-human evolution

(2017) Alexis P. Sullivan et al.   Nature Ecology & Evolution

Passive gear-induced timidity syndrome in wild fish populations and its potential ecological and managerial implications

(2016) Robert Arlinghaus et al.   FISH AND FISHERIES

Harvest-induced evolution: insights from aquatic and terrestrial systems

(2016) Anna Kuparinen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

Identification of Gene Networks for Residual Feed Intake in Angus Cattle Using Genomic Prediction and RNA-seq

(2016) Kristina L. Weber et al.   PLoS One

Fisheries-Induced Evolution

(2015) Mikko Heino et al.   Annual Review of Ecology Evolution and Systematics

From genes to populations: how fisheries-induced evolution alters stock productivity

(2015) Erin S. Dunlop et al.   ECOLOGICAL APPLICATIONS

The evolutionary legacy of size-selective harvesting extends from genes to populations

(2015) Silva Uusi-Heikkilä et al.   Evolutionary Applications

Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle12

(2015) A. Vincent et al.   JOURNAL OF ANIMAL SCIENCE

Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and residentOncorhynchus mykiss

(2015) Garrett J. McKinney et al.   MOLECULAR ECOLOGY

Temperature Stress Mediates Decanalization and Dominance of Gene Expression in Drosophila melanogaster

(2015) Jun Chen et al.   PLoS Genetics

In-Depth Duodenal Transcriptome Survey in Chickens with Divergent Feed Efficiency Using RNA-Seq

(2015) Guoqiang Yi et al.   PLoS One

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

(2015) Christopher W. Resnyk et al.   PLoS One

Effects of domestication on parr maturity, growth, and vulnerability to predation in Atlantic salmon

(2014) Paul V. Debes et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Fisheries-induced neutral and adaptive evolution in exploited fish populations and consequences for their adaptive potential

(2014) Lise Marty et al.   Evolutionary Applications

On the reproductive success of early-generation hatchery fish in the wild

(2014) Mark R. Christie et al.   Evolutionary Applications

Proteome variance differences within populations of European whitefish (Coregonus lavaretus) originating from contrasting salinity environments

(2014) Spiros Papakostas et al.   Journal of Proteomics

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Meta-analysis reveals lower genetic diversity in overfished populations

(2013) Malin L. Pinsky et al.   MOLECULAR ECOLOGY

Resilience and Recovery of Overexploited Marine Populations

(2013) P. Neubauer et al.   SCIENCE

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

Cultured fish: integrative biology and management of domestication and interactions with wild fish

(2012) Kai Lorenzen et al.   BIOLOGICAL REVIEWS

Experimental selection for body size at age modifies early life-history traits and muscle gene expression in adult zebrafish

(2012) I. P. G. Amaral et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Differences in transcription levels among wild, domesticated, and hybrid Atlantic salmon (Salmo salar) from two environments

(2012) PAUL V. DEBES et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals

(2012) Frank W. Albert et al.   PLoS Genetics

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)

(2011) Anna V Kukekova et al.   BMC GENOMICS

Reduced recruitment performance in natural populations of anadromous salmonids associated with hatchery-reared fish

(2011) M. W. Chilcote et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

(2011) Z. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Developmental Role of Agouti in Color Pattern Evolution

(2011) M. Manceau et al.   SCIENCE

Regulation of oocyte maturation in fish

(2010) Yoshitaka Nagahama et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Evidence for widespread adaptive evolution of gene expression in budding yeast

(2010) H. B. Fraser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals

(2010) Linda Laikre et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene Expression Variability within and between Human Populations and Implications toward Disease Susceptibility

(2010) Jingjing Li et al.   PLoS Computational Biology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

ORIGINAL ARTICLE: Implications of fisheries-induced evolution for stock rebuilding and recovery

(2009) Katja Enberg et al.   Evolutionary Applications

Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of muscle, liver and brain transcriptomes

(2009) Wendy Tymchuk et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Expected rate of fisheries-induced evolution is slow

(2009) Ken H. Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Domestication and growth hormone transgenesis cause similar changes in gene expression in coho salmon (Oncorhynchus kisutch)

(2009) R. H. Devlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human predators outpace other agents of trait change in the wild: Fig. 1.

(2009) Chris T. Darimont et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human-induced evolution caused by unnatural selection through harvest of wild animals

(2009) F. W. Allendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reversal of evolutionary downsizing caused by selective harvest of large fish

(2009) D. O. Conover et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PPI spider: A tool for the interpretation of proteomics data in the context of protein-protein interaction networks

(2009) Alexey V. Antonov et al.   PROTEOMICS

The Role of Fisheries-Induced Evolution

(2008) H. I. Browman et al.   SCIENCE

Genetic effects of harvest on wild animal populations

(2008) F ALLENDORF et al.   TRENDS IN ECOLOGY & EVOLUTION