Identification of Gene Networks for Residual Feed Intake in Angus Cattle Using Genomic Prediction and RNA-seq

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle

(2015) Pamela A. Alexandre et al.   BMC GENOMICS

Messenger RNA sequencing and pathway analysis provide novel insights into the biological basis of chickens’ feed efficiency

(2015) Nan Zhou et al.   BMC GENOMICS

Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers1

(2015) F. Paradis et al.   JOURNAL OF ANIMAL SCIENCE

Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD

(2014) Jen-hwa Chu et al.   BMC Systems Biology

Relationships of feeding behaviors with efficiency in RFI-divergent Japanese Black cattle1

(2014) M. McGee et al.   JOURNAL OF ANIMAL SCIENCE

Genomic predictions in Angus cattle: Comparisons of sample size, response variables, and clustering methods for cross-validation1

(2014) P. Boddhireddy et al.   JOURNAL OF ANIMAL SCIENCE

Measures of methane production and their phenotypic relationships with dry matter intake, growth, and body composition traits in beef cattle1,2

(2014) R. M. Herd et al.   JOURNAL OF ANIMAL SCIENCE

Multi-Tissue Omics Analyses Reveal Molecular Regulatory Networks for Puberty in Composite Beef Cattle

(2014) Angela Cánovas et al.   PLoS One

Immunotherapy for Prostate Cancer with Gc Protein-Derived Macrophage-Activating Factor, GcMAF

(2014) Nobuto Yamamoto et al.   Translational Oncology

A Multi-Trait, Meta-analysis for Detecting Pleiotropic Polymorphisms for Stature, Fatness and Reproduction in Beef Cattle

(2014) Sunduimijid Bolormaa et al.   PLoS Genetics

Reducing GHG emissions through genetic improvement for feed efficiency: effects on economically important traits and enteric methane production

(2013) J. A. Basarab et al.   Animal

Intestinal integrity, endotoxin transport and detoxification in pigs divergently selected for residual feed intake1

(2013) V. Mani et al.   JOURNAL OF ANIMAL SCIENCE

A genome-wide association scan in pig identifies novel regions associated with feed efficiency trait1

(2013) Goutam Sahana et al.   JOURNAL OF ANIMAL SCIENCE

Accuracy of prediction of genomic breeding values for residual feed intake and carcass and meat quality traits in Bos taurus, Bos indicus, and composite beef cattle1

(2013) S. Bolormaa et al.   JOURNAL OF ANIMAL SCIENCE

Calculating Sample Size Estimates for RNA Sequencing Data

(2013) Steven N. Hart et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Genome scan for meat quality traits in Nelore beef cattle

(2013) P. C. Tizioto et al.   PHYSIOLOGICAL GENOMICS

Genome-Wide Association Study Reveals Genetic Architecture of Eating Behavior in Pigs and Its Implications for Humans Obesity by Comparative Mapping

(2013) Duy Ngoc Do et al.   PLoS One

Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers

(2012) J.E. Pryce et al.   JOURNAL OF DAIRY SCIENCE

Effects of variation in porcine MYOD1 gene on muscle fiber characteristics, lean meat production, and meat quality traits

(2012) E.A. Lee et al.   MEAT SCIENCE

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

(2012) Ben J. Hayes et al.   TRENDS IN GENETICS

Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake

(2011) Y. Chen et al.   ANIMAL GENETICS

Genome-wide association studies for feedlot and growth traits in cattle1

(2011) S. Bolormaa et al.   JOURNAL OF ANIMAL SCIENCE

Partial-genome evaluation of postweaning feed intake and efficiency of crossbred beef cattle1,2

(2011) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle1

(2011) F. D. N. Mujibi et al.   JOURNAL OF ANIMAL SCIENCE

Functional characterisation of the bovine neuropeptide Y gene promoter and evaluation of the transcriptional activities of promoter haplotypes

(2011) Tanweer Alam et al.   MOLECULAR BIOLOGY REPORTS

AnimalTFDB: a comprehensive animal transcription factor database

(2011) H.-M. Zhang et al.   NUCLEIC ACIDS RESEARCH

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data

(2010) Antonio Reverter et al.   BIOINFORMATICS

Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood metabolic variables in finishing heifers divergently selected for residual feed intake1

(2010) A. K. Kelly et al.   JOURNAL OF ANIMAL SCIENCE

Leptin: A Critical Regulator of CD4+T-cell Polarizationin Vitroandin Vivo

(2009) Arvind Batra et al.   ENDOCRINOLOGY

Relationship between feeding behavior and residual feed intake in growing Brangus heifers

(2009) G. M. Bingham et al.   JOURNAL OF ANIMAL SCIENCE

Effect of divergence in residual feed intake on feeding behavior, blood metabolic variables, and body composition traits in growing beef heifers1

(2009) A. K. Kelly et al.   JOURNAL OF ANIMAL SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Identification of SNPs in MYOD gene family and their associations with carcass traits in cattle

(2009) M.S.A. Bhuiyan et al.   Livestock Science

Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant

(2009) Sender Lkhagvadorj et al.   PHYSIOLOGICAL GENOMICS

Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks

(2008) Antonio Reverter et al.   BIOINFORMATICS

Backgrounding and finishing diets are associated with inflammatory responses in feedlot steers1

(2008) B. N. Ametaj et al.   JOURNAL OF ANIMAL SCIENCE

Physiological basis for residual feed intake1

(2008) R. M. Herd et al.   JOURNAL OF ANIMAL SCIENCE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS