Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation

Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov.

(2015) Lindsay R. Triplett et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing

(2015) Marion Fischer-Le Saux et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and Variable-Number Tandem-Repeat Analyses Identify Nonpathogenic Xanthomonas arboricola Lineages Lacking the Canonical Type III Secretion System

(2015) Salwa Essakhi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alternative sigma factor RpoN2 is required for flagellar motility and full virulence of Xanthomonas oryzae pv. oryzae

(2015) Fang Tian et al.   MICROBIOLOGICAL RESEARCH

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas

(2015) Jonathan M. Jacobs et al.   Frontiers in Plant Science

Mechanism and structure of the bacterial type IV secretion systems

(2014) Peter J. Christie et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes

(2014) E. Sallet et al.   BIOINFORMATICS

Prediction of bacterial type IV secreted effectors by C-terminal features

(2014) Yejun Wang et al.   BMC GENOMICS

Pseudomonas aeruginosaMinor Pilins Prime Type IVa Pilus Assembly and Promote Surface Display of the PilY1 Adhesin

(2014) Ylan Nguyen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Responsiveness of different citrus genotypes to theXanthomonas citrissp.citri-derived pathogen-associated molecular pattern (PAMP) flg22 correlates with resistance to citrus canker

(2014) Qingchun Shi et al.   MOLECULAR PLANT PATHOLOGY

Xanthomonas citrisubsp.citriType IV Pilus Is Required for Twitching Motility, Biofilm Development, and Adherence

(2014) German Dunger et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

(2014) Julien Guglielmini et al.   NUCLEIC ACIDS RESEARCH

Bacterial pectate lyases, structural and functional diversity

(2014) Nicole Hugouvieux-Cotte-Pattat et al.   Environmental Microbiology Reports

Large-Scale Genomic Analysis Suggests a Neutral Punctuated Dynamics of Transposable Elements in Bacterial Genomes

(2014) Jaime Iranzo et al.   PLoS Computational Biology

Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulence-related gene content

(2013) Joachim Vandroemme et al.   BMC GENOMICS

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

(2013) Armelle Darrasse et al.   BMC GENOMICS

Comparative genomics of defense systems in archaea and bacteria

(2013) Kira S. Makarova et al.   NUCLEIC ACIDS RESEARCH

Xanthomonas arboricolapv.fragariae: what's in a name?

(2013) J. Vandroemme et al.   PLANT PATHOLOGY

A Genomic Redefinition of Pseudomonas avellanae species

(2013) Marco Scortichini et al.   PLoS One

Type I secretion systems – a story of appendices

(2013) Kerstin Kanonenberg et al.   RESEARCH IN MICROBIOLOGY

Pseudomonas aeruginosaTwitching Motility: Type IV Pili in Action

(2012) Lori L. Burrows   Annual Review of Microbiology

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

(2012) Isabelle Pieretti et al.   BMC GENOMICS

Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases

(2012) Frank-Jörg Vorhölter et al.   BMC MICROBIOLOGY

Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic

(2012) Moudjahidou Demba Diallo et al.   ISME Journal

SrfJ, a Salmonella Type III Secretion System Effector Regulated by PhoP, RcsB, and IolR

(2012) M. Cordero-Alba et al.   JOURNAL OF BACTERIOLOGY

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Molecular Characterization of Copper Resistance Genes from Xanthomonas citri subsp.citriand Xanthomonas alfalfae subsp. citrumelonis

(2011) Franklin Behlau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Type Three Effector Gene Distribution and Sequence Analysis Provide New Insights into the Pathogenicity of Plant-Pathogenic Xanthomonas arboricola

(2011) Ahmed Hajri et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

(2011) Neha Potnis et al.   BMC GENOMICS

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp.

(2011) A. J. Bogdanove et al.   JOURNAL OF BACTERIOLOGY

Pathogenomics of Xanthomonas: understanding bacterium–plant interactions

(2011) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Modulation of Host Cell Function byLegionella pneumophilaType IV Effectors

(2010) Andree Hubber et al.   Annual Review of Cell and Developmental Biology

genoPlotR: comparative gene and genome visualization in R

(2010) L. Guy et al.   BIOINFORMATICS

Identification of a genetic lineage within Xanthomonas arboricola pv. juglandis as the causal agent of vertical oozing canker of Persian (English) walnut in France

(2010) A. Hajri et al.   PLANT PATHOLOGY

Chemotaxis: how bacteria use memory

(2009) Nikita Vladimirov et al.   BIOLOGICAL CHEMISTRY

Adhesion and Fitness in the Bean Phyllosphere and Transmission to Seed ofXanthomonas fuscanssubsp.fuscans

(2009) A. Darsonval et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes

(2009) Z. Xu et al.   NUCLEIC ACIDS RESEARCH

A Filamentous Hemagglutinin-Like Protein of Xanthomonas axonopodis pv. citri, the Phytopathogen Responsible for Citrus Canker, Is Involved in Bacterial Virulence

(2009) Natalia Gottig et al.   PLoS One

A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas

(2009) Ahmed Hajri et al.   PLoS One

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

(2008) Steven L Salzberg et al.   BMC GENOMICS

Integron variability inXanthomonas arboricolapv.juglandisandXanthomonas arboricolapv.prunistrains

(2008) Daniela Barionovi et al.   FEMS MICROBIOLOGY LETTERS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Multiple Adhesin-Like Functions ofXanthomonas oryzaepv.oryzaeAre Involved in Promoting Leaf Attachment, Entry, and Virulence on Rice

(2008) Amit Das et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

VirB2 and VirB5 proteins: specialized adhesins in bacterial type-IV secretion systems?

(2008) Steffen Backert et al.   TRENDS IN MICROBIOLOGY