Transcriptome-based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection

Nuclear DNA content correlates with depth, body size, and diversification rate in amphipod crustaceans from ancient Lake Baikal, Russia

(2017) Nicholas W. Jeffery et al.   GENOME

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

(2016) Brian R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events

(2015) Sebastian Höhna   JOURNAL OF THEORETICAL BIOLOGY

Gene-Wide Identification of Episodic Selection

(2015) Ben Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

(2015) G. W. C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

(2015) Juliane D. Weiss et al.   PLoS One

Elasticity, friction, and pathway of γ-subunit rotation in FoF1-ATP synthase

(2015) Kei-ichi Okazaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomics of organismal diversification illuminated by adaptive radiations

(2015) Daniel Berner et al.   TRENDS IN GENETICS

A review of Gammaridae (Crustacea: Amphipoda): the family extent, its evolutionary history, and taxonomic redefinition of genera

(2015) Zhonge Hou et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolutionary diversification in freshwater sculpins (Cottoidea): a review of two major adaptive radiations

(2014) Akira Goto et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Fast adaptive responses in the oral jaw of Lake Victoria cichlids

(2014) Jacco C. van Rijssel et al.   EVOLUTION

Origin of the Lake Ohrid gammarid species flock: ancient local phylogenetic lineage diversification

(2014) Anna Wysocka et al.   JOURNAL OF BIOGEOGRAPHY

A first Glimpse at the genome of the Baikalian amphipodEulimnogammarus verrucosus

(2014) Lorena Rivarola-Duarte et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Novel trophic niches drive variable progress towards ecological speciation within an adaptive radiation of pupfishes

(2014) Christopher H. Martin et al.   MOLECULAR ECOLOGY

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

On Eulimnogammarus messerschmidtii, sp. n. (Amphipoda: Gammaridea) from Lake Baikal, Siberia, with redescription of E. cyanoides (Sowinsky) and remarks on taxonomy of the genus Eulimnogammarus

(2014) DARIA S. BEDULINA et al.   ZOOTAXA

Ecological opportunity and the adaptive diversification of lineages

(2014) Gary A. Wellborn et al.   Ecology and Evolution

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes

(2014) Shaohua Fan et al.   Frontiers in Genetics

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes

(2013) Paolo Franchini et al.   MOLECULAR ECOLOGY

Competition both drives and impedes diversification in a model adaptive radiation

(2013) S. F. Bailey et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multiple Fitness Peaks on the Adaptive Landscape Drive Adaptive Radiation in the Wild

(2013) C. H. Martin et al.   SCIENCE

Is regional species diversity bounded or unbounded?

(2012) Howard V. Cornell   BIOLOGICAL REVIEWS

Faunal communities at sites of gas- and oil-bearing fluids in Lake Baikal

(2012) Tamara I. Zemskaya et al.   GEO-MARINE LETTERS

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The endemic gastropod fauna of Lake Titicaca: correlation between molecular evolution and hydrographic history

(2012) Oliver Kroll et al.   Ecology and Evolution

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Eocene habitat shift from saline to freshwater promoted Tethyan amphipod diversification

(2011) Z. Hou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Late Cretaceous-Cenozoic history of the Lake Baikal depression and formation of its unique biodiversity

(2011) V. D. Mats et al.   STRATIGRAPHY AND GEOLOGICAL CORRELATION

Phylogeography and systematics of Acanthogammarus s. str., giant amphipod crustaceans from Lake Baikal

(2011) Mikhail E. Daneliya et al.   ZOOLOGICA SCRIPTA

Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism

(2010) Jonathan B. Losos   AMERICAN NATURALIST

ADAPTIVE RADIATION AND ECOLOGICAL DIVERSIFICATION OF SULAWESI'S ANCIENT LAKE SHRIMPS

(2010) Kristina Von Rintelen et al.   EVOLUTION

Young proteins experience more variable selection pressures than old proteins

(2010) A. Vishnoi et al.   GENOME RESEARCH

Ecological opportunity and the origin of adaptive radiations

(2010) J. B. YODER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ancient lakes revisited: from the ecology to the genetics of speciation

(2010) MELANIA E. CRISTESCU et al.   MOLECULAR ECOLOGY

Essentials for ATP Synthesis by F1F0ATP Synthases

(2009) Christoph von Ballmoos et al.   Annual Review of Biochemistry

EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?

(2008) Daniel L. Rabosky et al.   EVOLUTION

Concurrent evolution of ancient sister lakes and sister species: the freshwater gastropod genus Radix in lakes Ohrid and Prespa

(2008) Christian Albrecht et al.   HYDROBIOLOGIA

The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes

(2008) WALTER SALZBURGER   MOLECULAR ECOLOGY

Pressure and temperature interactions on aerobic metabolism of migrating European silver eel

(2008) D. Scaion et al.   RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY

Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap

(2008) Junhyong Kim et al.   SYSTEMATIC BIOLOGY

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics