A first Glimpse at the genome of the Baikalian amphipodEulimnogammarus verrucosus

The complete mitochondrial genome of the subterranean crustaceanMetacrangonyx longipes(Amphipoda): A unique gene order and extremely short control region

(2013) Maria M. Bauzà-Ribot et al.   Mitochondrial DNA

Expression patterns and organization of thehsp70genes correlate with thermotolerance in two congener endemic amphipod species (Eulimnogammarus cyaneusandE. verrucosus) from Lake Baikal

(2013) D. S. Bedulina et al.   MOLECULAR ECOLOGY

Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes

(2012) Feng-Jiau Lin et al.   BMC GENOMICS

Characterization of host microRNAs that respond to DNA virus infection in a crustacean

(2012) Tianzhi Huang et al.   BMC GENOMICS

The mitogenome of Gammarus duebeni (Crustacea Amphipoda): A new gene order and non-neutral sequence evolution of tandem repeats in the control region

(2012) Lukas Krebes et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Genome size differences in Hyalella cryptic species

(2012) Roland Vergilino et al.   GENOME

Complete mitochondrial genome of the Antarctic amphipodGondogeneia antarctica(Crustacea, amphipod)

(2012) Seung Chul Shin et al.   Mitochondrial DNA

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2012)   NUCLEIC ACIDS RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

High Through-Put Sequencing of the Parhyale hawaiensis mRNAs and microRNAs to Aid Comparative Developmental Studies

(2012) Martin J. Blythe et al.   PLoS One

The correlation of genome size and DNA methylation rate in metazoans

(2012) Marcus Lechner et al.   THEORY IN BIOSCIENCES

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

(2011) Victor Zeng et al.   BMC GENOMICS

Efficient de novo assembly of large genomes using compressed data structures

(2011) J. T. Simpson et al.   GENOME RESEARCH

The role of the heat shock proteins (HSP70 and sHSP) in the thermotolerance of freshwater amphipods from contrasting habitats

(2011) Zhanna M. Shatilina et al.   JOURNAL OF THERMAL BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements

(2011) Frank Jühling et al.   NUCLEIC ACIDS RESEARCH

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

(2011) Mark S. Longo et al.   PLoS One

Whole-Genome Analysis Reveals That Active Heat Shock Factor Binding Sites Are Mostly Associated with Non-Heat Shock Genes in Drosophila melanogaster

(2011) Sarah E. Gonsalves et al.   PLoS One

MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda

(2011) L. I. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Complete mitochondrial genome sequence of the Arctic gammarid, Onisimus nanseni (Crustacea; Amphipoda): Novel gene structures and unusual control region features

(2010) Jang-Seu Ki et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

BAC library for the amphipod crustacean, Parhyale hawaiensis

(2010) Ronald J. Parchem et al.   GENOMICS

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes

(2008) G.-F. Richard et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS