Shotgun mitogenomics across body size classes in a local assemblage of tropical Diptera: Phylogeny, species diversity and mitochondrial abundance spectrum

Mitochondrial genotype modulates mtDNA copy number and organismal phenotype in Drosophila

(2017) Tiina S. Salminen et al.   MITOCHONDRION

Modelling the community size-spectrum: recent developments and new directions

(2016) Jérôme Guiet et al.   ECOLOGICAL MODELLING

Counting animal species with DNA barcodes: Canadian insects

(2016) Paul D. N. Hebert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Major evolutionary transitions of life, metabolic scaling and the number and size of mitochondria and chloroplasts

(2016) Jordan G. Okie et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-throughput biodiversity analysis: Rapid assessment of species richness and ecological interactions of Chrysomelidae (Coleoptera) in the tropics

(2016) Jesus Gomez-Zurita et al.   ZooKeys

Inferring neutral biodiversity parameters using environmental DNA data sets

(2016) Guilhem Sommeria-Klein et al.   Scientific Reports

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Molecular phylogeny of the megadiverse insect infraorder Bibionomorphasensu lato(Diptera)

(2016) Jan Ševčík et al.   PeerJ

Mitochondrial metagenomics: letting the genes out of the bottle

(2016) Alex Crampton-Platt et al.   GigaScience

Integrating macroecological metrics and community taxonomic structure

(2015) John Harte et al.   ECOLOGY LETTERS

Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample

(2015) Alex Crampton-Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

New approaches narrow global species estimates for beetles, insects, and terrestrial arthropods

(2015) Nigel E. Stork et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages

(2015) Carola Gómez-Rodríguez et al.   Methods in Ecology and Evolution

High-throughput monitoring of wild bee diversity and abundance via mitogenomics

(2015) Min Tang et al.   Methods in Ecology and Evolution

An explanation of the relationship between mass, metabolic rate and characteristic length for placental mammals

(2015) Charles C. Frasier   PeerJ

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

(2014) Min Tang et al.   NUCLEIC ACIDS RESEARCH

Maximum information entropy: a foundation for ecological theory

(2014) John Harte et al.   TRENDS IN ECOLOGY & EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Can We Name Earth's Species Before They Go Extinct?

(2013) M. J. Costello et al.   SCIENCE

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Arthropod Diversity in a Tropical Forest

(2012) Y. Basset et al.   SCIENCE

The phylogenetic relationships among infraorders and superfamilies of Diptera based on morphological evidence

(2012) CHRISTINE L. LAMBKIN et al.   SYSTEMATIC ENTOMOLOGY

Patterns of size change in late Neogene pocket gophers from the Meade Basin of Kansas and Oklahoma

(2012) Robert A. Martin et al.   HISTORICAL BIOLOGY

Can clade age alone explain the relationship between body size and diversity?

(2012) R. S. Etienne et al.   Interface Focus

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Analyzing Tropical Forest Tree Species Abundance Distributions Using a Nonneutral Model and through Approximate Bayesian Inference

(2011) Franck Jabot et al.   AMERICAN NATURALIST

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Global Patterns of Guild Composition and Functional Diversity of Spiders

(2011) Pedro Cardoso et al.   PLoS One

Episodic radiations in the fly tree of life

(2011) B. M. Wiegmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Biodiversity scales from plots to biomes with a universal species-area curve

(2009) John Harte et al.   ECOLOGY LETTERS

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

An integrative framework for stochastic, size-structured community assembly

(2009) J. P. O'Dwyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring the parameters of the neutral theory of biodiversity using phylogenetic information and implications for tropical forests

(2008) Franck Jabot et al.   ECOLOGY LETTERS