Invertebrate population genetics across Earth's largest habitat: The deep-sea floor

Isolation and Characterization of Microsatellite DNA Markers in the Deep-Sea AmphipodParalicella tenuipesby Illumina MiSeq Sequencing

(2016) Heather Ritchie et al.   JOURNAL OF HEREDITY

Ocean currents determine functional connectivity in an Antarctic deep-sea shrimp

(2016) Johannes Dambach et al.   Marine Ecology-An Evolutionary Perspective

A decade of seascape genetics: contributions to basic and applied marine connectivity

(2016) KA Selkoe et al.   MARINE ECOLOGY PROGRESS SERIES

Connectivity in the cold: the comparative population genetics of vent-endemic fauna in the Scotia Sea, Southern Ocean

(2016) C. N. Roterman et al.   MOLECULAR ECOLOGY

A synthesis of genetic connectivity in deep-sea fauna and implications for marine reserve design

(2016) Amy R. Baco et al.   MOLECULAR ECOLOGY

Deep-sea diversity patterns are shaped by energy availability

(2016) Skipton N. C. Woolley et al.   NATURE

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Large-Scale Genotyping-by-Sequencing Indicates High Levels of Gene Flow in the Deep-Sea Octocoral Swiftia simplex (Nutting 1909) on the West Coast of the United States

(2016) Meredith V. Everett et al.   PLoS One

A decade of seascape genetics: contributions to basic and applied marine connectivity

(2016) KA Selkoe et al.   MARINE ECOLOGY PROGRESS SERIES

Population Genomics of Marine Fishes: Next-Generation Prospects and Challenges

(2016) Jakob Hemmer-Hansen et al.   BIOLOGICAL BULLETIN

Increasing the Depth of Current Understanding: Sensitivity Testing of Deep-Sea Larval Dispersal Models for Ecologists

(2016) Rebecca E. Ross et al.   PLoS One

Mitochondrial DNA Analyses Indicate High Diversity, Expansive Population Growth and High Genetic Connectivity of Vent Copepods (Dirivultidae) across Different Oceans

(2016) Sabine Gollner et al.   PLoS One

Contrasted phylogeographic patterns on mitochondrial DNA of shallow and deep brittle stars across the Atlantic-Mediterranean area

(2016) Sergi Taboada et al.   Scientific Reports

Dispersal and population connectivity in the deep North Atlantic estimated from physical transport processes

(2015) Ron J. Etter et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Intergradation between discrete lineages of Tevnia jerichonana , a deep-sea hydrothermal vent tubeworm

(2015) Haibin Zhang et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The impacts of deep-sea fisheries on benthic communities: a review

(2015) Malcolm R. Clark et al.   ICES JOURNAL OF MARINE SCIENCE

Staying well connected – Lithistid sponges on seamounts

(2015) Merrick Ekins et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

On some hypotheses of diversity of animal life at great depths on the sea floor

(2015) Craig R. McClain et al.   Marine Ecology-An Evolutionary Perspective

An Exon-Capture System for the Entire Class Ophiuroidea

(2015) Andrew F. Hugall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Species are hypotheses: avoid connectivity assessments based on pillars of sand

(2015) Eric Pante et al.   MOLECULAR ECOLOGY

Genetically distinct populations of northern shrimp,Pandalus borealis, in the North Atlantic: adaptation to different temperatures as an isolation factor

(2015) Per Erik Jorde et al.   MOLECULAR ECOLOGY

On the occurrence of false positives in tests of migration under an isolation-with-migration model

(2015) Jody Hey et al.   MOLECULAR ECOLOGY

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

(2015) Laura Benestan et al.   MOLECULAR ECOLOGY

Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals

(2015) David J. Combosch et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Home Bodies and Wanderers: Sympatric Lineages of the Deep-Sea Black Coral Leiopathes glaberrima

(2015) Dannise V. Ruiz-Ramos et al.   PLoS One

Testing the depth-differentiation hypothesis in a deepwater octocoral

(2015) A. M. Quattrini et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Can the source-sink hypothesis explain macrofaunal abundance patterns in the abyss? A modelling test

(2015) S. M. Hardy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population Genetic History of Aristeus antennatus (Crustacea: Decapoda) in the Western and Central Mediterranean Sea

(2015) Annamaria Marra et al.   PLoS One

Cryptic speciation along a bathymetric gradient

(2014) Amanda E. Glazier et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Use of RAD sequencing for delimiting species

(2014) E Pante et al.   HEREDITY

Does population genetic structure support present management regulations of the northern shrimp (Pandalus borealis) in Skagerrak and the North Sea?

(2014) Halvor Knutsen et al.   ICES JOURNAL OF MARINE SCIENCE

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics

(2014) Mandy Man-Ying Tin et al.   PLoS One

Comparative Population Structure of Two Deep-Sea Hydrothermal-Vent-Associated Decapods (Chorocaris sp. 2 and Munidopsis lauensis) from Southwestern Pacific Back-Arc Basins

(2014) Andrew David Thaler et al.   PLoS One

A Call for Deep-Ocean Stewardship

(2014) K. J. Mengerink et al.   SCIENCE

Divergence and molecular variation in common whelkBuccinum undatum(Gastropoda: Buccinidae) in Iceland: a trans-Atlantic comparison

(2013) Snaebjörn Pálsson et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A hybrid zone between Bathymodiolus mussel lineages from eastern Pacific hydrothermal vents

(2013) Shannon B Johnson et al.   BMC EVOLUTIONARY BIOLOGY

Development and application of genomic tools to the restoration of green abalone in southern California

(2013) K. M. Gruenthal et al.   CONSERVATION GENETICS

Limited phylogeographic structure for five bathyal ophiuroids at continental scales

(2013) Timothy D. O'Hara et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Insights into the population dynamics of the deep-sea coral genus Paramuricea in the Gulf of Mexico

(2013) Cheryl L. Doughty et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Microplastic pollution in deep-sea sediments

(2013) Lisbeth Van Cauwenberghe et al.   ENVIRONMENTAL POLLUTION

Isolation By Distance (IBD) signals in the deep-water rose shrimp Parapenaeus longirostris (Lucas, 1846) (Decapoda, Panaeidae) in the Mediterranean Sea

(2013) S. Lo Brutto et al.   MARINE ENVIRONMENTAL RESEARCH

Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics

(2013) A. M. Reitzel et al.   MOLECULAR ECOLOGY

Genetic and Morphological Divergences in the Cosmopolitan Deep-Sea Amphipod Eurythenes gryllus Reveal a Diverse Abyss and a Bipolar Species

(2013) Charlotte Havermans et al.   PLoS One

Population Differentiation and Species Formation in the Deep Sea: The Potential Role of Environmental Gradients and Depth

(2013) Robert M. Jennings et al.   PLoS One

From principles to practice: a spatial approach to systematic conservation planning in the deep sea

(2013) L. M. Wedding et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap

(2013) Philippe Gayral et al.   PLoS Genetics

ezRAD: a simplified method for genomic genotyping in non-model organisms

(2013) Robert J. Toonen et al.   PeerJ

Further investigations on populations of the deep-water blue and red shrimp Aristeus antennatus (Risso, 1816) (Decapoda, Dendrobranchiata), as inferred from Amplified Fragment Length Polymorphism (AFLP) and mtDNA analyses

(2012) Sabrina Lo Brutto et al.   CRUSTACEANA

Sympatric Speciation in the Post “Modern Synthesis” Era of Evolutionary Biology

(2012) Christopher E. Bird et al.   Evolutionary Biology

Pelagic propagule duration and developmental mode: reassessment of a fading link

(2012) Annie Mercier et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Deep genetic divergence in giant red shrimp Aristaeomorpha foliacea (Risso, 1827) across a wide distributional range

(2012) M.V. Fernández et al.   JOURNAL OF SEA RESEARCH

Theoretical limits to the correlation between pelagic larval duration and population genetic structure

(2012) SØREN FAURBY et al.   MOLECULAR ECOLOGY

Spatial and temporal patterns of genetic variation in the widespread antitropical deep-sea coralParagorgia arborea

(2012) S. Herrera et al.   MOLECULAR ECOLOGY

Speciation patterns in gastropods with long-lived larvae from deep-sea seamounts

(2012) M. Castelin et al.   MOLECULAR ECOLOGY

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation

(2012) Pierre De Wit et al.   MOLECULAR ECOLOGY

Comprehensive sampling reveals circumpolarity and sympatry in seven mitochondrial lineages of the Southern Ocean crinoid speciesPromachocrinus kerguelensis(Echinodermata)

(2012) L. G. HEMERY et al.   MOLECULAR ECOLOGY

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

(2012) Pierre De Wit et al.   Molecular Ecology Resources

Deep-ocean mineral deposits as a source of critical metals for high- and green-technology applications: Comparison with land-based resources

(2012) James R. Hein et al.   ORE GEOLOGY REVIEWS

Panmixia in a Fragmented and Unstable Environment: The Hydrothermal Shrimp Rimicaris exoculata Disperses Extensively along the Mid-Atlantic Ridge

(2012) Sara Teixeira et al.   PLoS One

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

Patterns of Deep-Sea Genetic Connectivity in the New Zealand Region: Implications for Management of Benthic Ecosystems

(2012) Eleanor K. Bors et al.   PLoS One

A proposed biogeography of the deep ocean floor

(2012) Les Watling et al.   PROGRESS IN OCEANOGRAPHY

Genetic diversity and demographic instability in Riftia pachyptilatubeworms from eastern Pacific hydrothermal vents

(2011) D Katharine Coykendall et al.   BMC EVOLUTIONARY BIOLOGY

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Analysis of genetic variability in Aristaeomorpha foliacea (Crustacea, Aristeidae) using DNA-ISSR (Inter Simple Sequence Repeats) markers

(2011) Maria Victoria Fernández et al.   COMPTES RENDUS BIOLOGIES

Genetic discontinuity among regional populations of Lophelia pertusa in the North Atlantic Ocean

(2011) Cheryl L. Morrison et al.   CONSERVATION GENETICS

In situ observations of fish associated with coral reefs off Ireland

(2011) M. Söffker et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Retrospective coalescent methods and the reconstruction of metapopulation histories in the sea

(2011) Peter B. Marko et al.   EVOLUTIONARY ECOLOGY

Phylogeography of Acesta clams from submarine seamounts and escarpments along the western margin of North America

(2011) Gillian E. Clague et al.   Marine Ecology-An Evolutionary Perspective

Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

(2011) Rita Cannas et al.   Marine Ecology-An Evolutionary Perspective

Marine connectivity: a new look at pelagic larval duration and genetic metrics of dispersal

(2011) KA Selkoe et al.   MARINE ECOLOGY PROGRESS SERIES

Phylogeography of a pan-Atlantic abyssal protobranch bivalve: implications for evolution in the Deep Atlantic

(2011) RON J. ETTER et al.   MOLECULAR ECOLOGY

Evidence of hidden biodiversity, ongoing speciation and diverse patterns of genetic structure in giant Antarctic amphipods

(2011) HELENA P. BAIRD et al.   MOLECULAR ECOLOGY

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Effects of sample size, number of markers, and allelic richness on the detection of spatial genetic pattern

(2011) ERIN L. LANDGUTH et al.   Molecular Ecology Resources

Phylogeographic patterns of decapod crustaceans at the Atlantic–Mediterranean transition

(2011) Víctor Hugo García-Merchán et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Volume of Earth’s Ocean

(2011) Matthew Charette et al.   OCEANOGRAPHY

Out of Their Depth? Isolated Deep Populations of the Cosmopolitan Coral Desmophyllum dianthus May Be Highly Vulnerable to Environmental Change

(2011) Karen J. Miller et al.   PLoS One

How Many Species Are There on Earth and in the Ocean?

(2011) Camilo Mora et al.   PLOS BIOLOGY

Hidden diversity and endemism on seamounts: focus on poorly dispersive neogastropods

(2010) MAGALIE CASTELIN et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Determining gene flow and the influence of selection across the equatorial barrier of the East Pacific Rise in the tube-dwelling polychaete Alvinella pompejana

(2010) Sophie Plouviez et al.   BMC EVOLUTIONARY BIOLOGY

Genetic differentiation in the circum—Antarctic sea spider Nymphon australe (Pycnogonida; Nymphonidae)

(2010) Claudia P. Arango et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Phylogeography of the Antarctic planktotrophic brittle star Ophionotus victoriae reveals genetic structure inconsistent with early life history

(2010) Rebecca L. Hunter et al.   MARINE BIOLOGY

Genetic homogeneity and circum-Antarctic distribution of two benthic shrimp species of the Southern Ocean, Chorismus antarcticus and Nematocarcinus lanceopes

(2010) Michael J. Raupach et al.   MARINE BIOLOGY

Conflicting estimates of connectivity among deep-sea coral populations

(2010) Karen Miller et al.   Marine Ecology-An Evolutionary Perspective

Incongruent patterns of genetic connectivity among four ophiuroid species with differing coral host specificity on North Atlantic seamounts

(2010) Walter Cho et al.   Marine Ecology-An Evolutionary Perspective

Genetic structure in the blue and red shrimp Aristeus antennatus and the role played by hydrographical and oceanographical barriers

(2010) MV Fernández et al.   MARINE ECOLOGY PROGRESS SERIES

Genetic diversity and connectivity of deep-sea hydrothermal vent metapopulations

(2010) ROBERT C. VRIJENHOEK   MOLECULAR ECOLOGY

Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata

(2010) T. B. HOAREAU et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Biodiversity's Big Wet Secret: The Global Distribution of Marine Biological Records Reveals Chronic Under-Exploration of the Deep Pelagic Ocean

(2010) Thomas J. Webb et al.   PLoS One

Influence of the genetic structure of the red and blue shrimp, Aristeus antennatus (Risso, 1816), on the sustainability of a deep-sea population along a depth gradient in the western Mediterranean

(2010) María Inés Roldán et al.   SCIENTIA MARINA

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

Gene Flow and Isolation among Populations of Marine Animals

(2009) Michael E. Hellberg   Annual Review of Ecology Evolution and Systematics

Environmental features of deep-sea habitats linked to the genetic population structure of a crustacean species in the Mediterranean Sea

(2009) Teresa Maggio et al.   Marine Ecology-An Evolutionary Perspective

Population genetics, larval dispersal, and connectivity in marine systems

(2009) K Weersing et al.   MARINE ECOLOGY PROGRESS SERIES

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

Ocean barriers and glaciation: evidence for explosive radiation of mitochondrial lineages in the Antarctic sea slugDoris kerguelenensis(Mollusca, Nudibranchia)

(2009) NERIDA G. WILSON et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species

(2009) Santiago Herrera et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

Exponential Decline of Deep-Sea Ecosystem Functioning Linked to Benthic Biodiversity Loss

(2008) Roberto Danovaro et al.   CURRENT BIOLOGY

LIFE HUNG BY A THREAD: ENDURANCE OF ANTARCTIC FAUNA IN GLACIAL PERIODS

(2008) Sven Thatje et al.   ECOLOGY

EVALUATING SIGNATURES OF GLACIAL REFUGIA FOR NORTH ATLANTIC BENTHIC MARINE TAXA

(2008) Christine A. Maggs et al.   ECOLOGY

Multilocus phylogeography and phylogenetics using sequence-based markers

(2008) Patrícia H. Brito et al.   GENETICA

Analysis of genetic structure of the red shrimp Aristeus antennatus from the Western Mediterranean employing two mitochondrial regions

(2008) M. I. Roldán et al.   GENETICA

Evaluating Connectivity in the Brooding Brittle Star Astrotoma agassizii across the Drake Passage in the Southern Ocean

(2008) Rebecca L. Hunter et al.   JOURNAL OF HEREDITY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One