Gut microbiota of a long-distance migrant demonstrates resistance against environmental microbe incursions

Bacterial community collapse: a meta-analysis of the sinonasal microbiota in chronic rhinosinusitis

(2017) Brett Wagner Mackenzie et al.   ENVIRONMENTAL MICROBIOLOGY

Invisible trophic links? Quantifying the importance of non-standard food sources for key intertidal avian predators in the Eastern Atlantic

(2017) PM Lourenço et al.   MARINE ECOLOGY PROGRESS SERIES

Impacts of canine distemper virus infection on the giant panda population from the perspective of gut microbiota

(2017) Na Zhao et al.   Scientific Reports

Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird

(2017) Jakub Kreisinger et al.   Frontiers in Microbiology

Evolutionary Biology Needs Wild Microbiomes

(2017) Sarah M. Hird   Frontiers in Microbiology

Invisible trophic links? Quantifying the importance of non-standard food sources for key intertidal avian predators in the Eastern Atlantic

(2017) PM Lourenço et al.   MARINE ECOLOGY PROGRESS SERIES

Bacterial Succession in the Broiler Gastrointestinal Tract

(2016) Samir Ranjitkar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Helminth burden and ecological factors associated with alterations in wild host gastrointestinal microbiota

(2016) Lindsay K Newbold et al.   ISME Journal

Nematode parasite diversity in birds: the role of host ecology, life history and migration

(2016) Tommy L. F. Leung et al.   JOURNAL OF ANIMAL ECOLOGY

Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota ofAnolislizards

(2016) Tiantian Ren et al.   MOLECULAR ECOLOGY

Gut microbial ecology of lizards: insights into diversity in the wild, effects of captivity, variation across gut regions and transmission

(2016) Kevin D. Kohl et al.   MOLECULAR ECOLOGY

The microbiome and innate immunity

(2016) Christoph A. Thaiss et al.   NATURE

Age-Related Differences in the Gastrointestinal Microbiota of Chinstrap Penguins (Pygoscelis antarctica)

(2016) Andrés Barbosa et al.   PLoS One

Characterising the interspecific variations and convergence of gut microbiota in Anseriformes herbivores at wintering areas

(2016) Yuzhan Yang et al.   Scientific Reports

Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model

(2016) Céline Ribière et al.   Scientific Reports

A pan-European, multipopulation assessment of migratory connectivity in a near-threatened migrant bird

(2015) Tom Finch et al.   DIVERSITY AND DISTRIBUTIONS

Development, diet and dynamism: longitudinal and cross-sectional predictors of gut microbial communities in wild baboons

(2015) Tiantian Ren et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species

(2015) Katherine R. Amato et al.   OECOLOGIA

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Comparison of methods for fecal microbiome biospecimen collection

(2014) Christine Dominianni et al.   BMC MICROBIOLOGY

Successional changes in the chicken cecal microbiome during 42 days of growth are independent of organic acid feed additives

(2014) Brian B Oakley et al.   BMC Veterinary Research

Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut

(2014) Henning Seedorf et al.   CELL

Role of the Microbiota in Immunity and Inflammation

(2014) Yasmine Belkaid et al.   CELL

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

(2014) Michelle G Rooks et al.   ISME Journal

PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome

(2014) A. M. Eren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

(2014) Brandon Brooks et al.   Microbiome

Diversity and Composition of the Adult Fecal Microbiome Associated with History of Cesarean Birth or Appendectomy: Analysis of the American Gut Project

(2014) James J. Goedert et al.   EBioMedicine

Fecal microbiomes of non-human primates in Western Uganda reveal species-specific communities largely resistant to habitat perturbation

(2013) Aleia I. McCord et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SIV-Induced Instability of the Chimpanzee Gut Microbiome

(2013) Andrew H. Moeller et al.   Cell Host & Microbe

Disruption of the gut microbiome as a risk factor for microbial infections

(2013) Arya Khosravi et al.   CURRENT OPINION IN MICROBIOLOGY

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity

(2013) Kevin D. Kohl et al.   Environmental Microbiology Reports

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Ecological drift and local exposures drive enteric bacterial community differences within species of Galápagos iguanas

(2012) EMILY W. LANKAU et al.   MOLECULAR ECOLOGY

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Role of the intestinal microbiome in health and disease: from correlation to causation

(2012) Willem M de Vos et al.   NUTRITION REVIEWS

Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park

(2012) P. H. Degnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Continent-wide tracking to determine migratory connectivity and tropical habitat associations of a declining aerial insectivore

(2012) K. C. Fraser et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sinus Microbiome Diversity Depletion and Corynebacterium tuberculostearicum Enrichment Mediates Rhinosinusitis

(2012) N. A. Abreu et al.   Science Translational Medicine

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

(2011) Jeffrey J Werner et al.   ISME Journal

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Animal Migration and Infectious Disease Risk

(2011) S. Altizer et al.   SCIENCE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

(2010) Christian L. Lauber et al.   FEMS MICROBIOLOGY LETTERS

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

(2010) C. Manichanh et al.   GENOME RESEARCH

Diversity and temporal stability of bacterial communities in a model passerine bird, the zebra finch

(2010) CLARE McW. H. BENSKIN et al.   MOLECULAR ECOLOGY

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sediment in Stomach Contents of Western Sandpipers and Dunlin Provide Evidence of Biofilm Feeding

(2010) Kimberley J. Mathot et al.   WATERBIRDS

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

BIOFILM GRAZING IN A HIGHER VERTEBRATE: THE WESTERN SANDPIPER,CALIDRIS MAURI

(2008) Tomohiro Kuwae et al.   ECOLOGY

The immediate environment during postnatal development has long-term impact on gut community structure in pigs

(2008) Claire L Thompson et al.   ISME Journal