Helminth burden and ecological factors associated with alterations in wild host gastrointestinal microbiota

Host sex and parasitism in Red-winged Blackbirds (Agelaius phoeniceus): examining potential causes of infection biases in a sexually dimorphic species

(2015) T.E. Stewart et al.   CANADIAN JOURNAL OF ZOOLOGY

Siblings of patients with Crohn’s disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities

(2015) Charlotte Hedin et al.   GUT

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Interactions between multiple helminths and the gut microbiota in wild rodents

(2015) Jakub Kreisinger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

An ecosystem approach to understanding and managing within-host parasite community dynamics

(2015) Evelyn C. Rynkiewicz et al.   TRENDS IN PARASITOLOGY

Differences in the Faecal Microbiome in Schistosoma haematobium Infected Children vs. Uninfected Children

(2015) Gemma Louise Kay et al.   PLoS Neglected Tropical Diseases

Chronic Trichuris muris Infection in C57BL/6 Mice Causes Significant Changes in Host Microbiota and Metabolome: Effects Reversed by Pathogen Clearance

(2015) Ashley Houlden et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Special structures of hoopoe eggshells enhance the adhesion of symbiont-carrying uropygial secretion that increase hatching success

(2014) Manuel Martín-Vivaldi et al.   JOURNAL OF ANIMAL ECOLOGY

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

The microbiota and helminths: sharing the same niche in the human host

(2014) LAURA GLENDINNING et al.   PARASITOLOGY

Parasitism in early life: environmental conditions shape within-brood variation in responses to infection

(2014) Hanna M. V. Granroth-Wilding et al.   Ecology and Evolution

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota

(2014) Soo Ching Lee et al.   PLoS Neglected Tropical Diseases

Characterizing the avian gut microbiota: membership, driving influences, and potential function

(2014) David W. Waite et al.   Frontiers in Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Clostridium scindens: a human gut microbe with a high potential to convert glucocorticoids into androgens

(2013) Jason M. Ridlon et al.   JOURNAL OF LIPID RESEARCH

Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota

(2013) Philip Cooper et al.   PLoS One

Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity

(2013) J. G. M. Markle et al.   SCIENCE

SeXX matters in immunity

(2013) J.G. Markle et al.   TRENDS IN IMMUNOLOGY

The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale

(2012) Christina Hazard et al.   ISME Journal

Gut Microbiome of the Critically Endangered New Zealand Parrot, the Kakapo (Strigops habroptilus)

(2012) David W. Waite et al.   PLoS One

Endoscopy as a novel method for assessing endoparasite burdens in free-ranging European shags (Phalacrocorax aristotelis)

(2012) Sarah Burthe et al.   Methods in Ecology and Evolution

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Pathology associated with Contracaecum rudolphii (Nematoda: Anisakidae) infection in the great cormorant Phalacrocorax carbo (L. 1758)

(2011) J. Rokicki et al.   HELMINTHOLOGIA

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

The X chromosome and immune associated genes

(2011) Ilaria Bianchi et al.   JOURNAL OF AUTOIMMUNITY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Sexually transmitted bacteria affect female cloacal assemblages in a wild bird

(2010) Joël White et al.   ECOLOGY LETTERS

Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus

(2010) Seth T. Walk et al.   INFLAMMATORY BOWEL DISEASES

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

(2010) Christopher J van der Gast et al.   ISME Journal

Wildlife diseases: from individuals to ecosystems

(2010) Daniel M. Tompkins et al.   JOURNAL OF ANIMAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Exploitation of the Intestinal Microflora by the Parasitic Nematode Trichuris muris

(2010) K. S. Hayes et al.   SCIENCE

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Yolk androgens and the development of avian immunity: an experiment in jackdaws (Corvus monedula)

(2009) M. I. Sandell et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Avian Incubation Inhibits Growth and Diversification of Bacterial Assemblages on Eggs

(2009) Matthew D. Shawkey et al.   PLoS One

Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces

(2008) J. Lu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors

(2008) Christopher J. Van Der Gast et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular evidence for the occurrence of Contracaecum rudolphii A (Nematoda: Anisakidae) in shag Phalacrocorax aristotelis (Linnaeus) (Aves: Phalacrocoracidae) from Sardinia (western Mediterranean Sea)

(2008) Sarra Farjallah et al.   PARASITOLOGY INTERNATIONAL

Parasite Treatment Affects Maternal Investment in Sons

(2008) T. E. Reed et al.   SCIENCE