Genetic Architecture and Selection of Chinese Cattle Revealed by Whole Genome Resequencing

Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks

(2017) Ivica Medugorac et al.   NATURE GENETICS

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle

(2016) Derek M. Bickhart et al.   DNA RESEARCH

P5061 Association study between SNPs of the genes within bovine QTLs and meat quality of Hanwoo

(2016) D. Yoon et al.   JOURNAL OF ANIMAL SCIENCE

PSMC analysis of effective population sizes in molecular ecology and its application to black-and-whiteFicedulaflycatchers

(2016) Krystyna Nadachowska-Brzyska et al.   MOLECULAR ECOLOGY

Whole-genome sequencing of the endangered bovine species Gayal (Bos frontalis) provides new insights into its genetic features

(2016) Chugang Mei et al.   Scientific Reports

A Meta-Assembly of Selection Signatures in Cattle

(2016) Imtiaz A. S. Randhawa et al.   PLoS One

Identification of pleiotropic genes and gene sets underlying growth and immunity traits: a case study on Meishan pigs

(2015) Z. Zhang et al.   Animal

Developmental progress and current status of the Animal QTLdb

(2015) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Elevated dairy fat intake in lactating women alters milk lipid and fatty acids without detectible changes in expression of genes related to lipid uptake or synthesis

(2015) Katherine M. Yahvah et al.   NUTRITION RESEARCH

Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions

(2015) Qiang Qiu et al.   Nature Communications

Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle

(2014) Lingyang Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history

(2014) Xuming Zhou et al.   NATURE GENETICS

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Drastic population fluctuations explain the rapid extinction of the passenger pigeon

(2014) C.-M. Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

(2014) Jared E. Decker et al.   PLoS Genetics

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity

(2013) Kyung-Tai Lee et al.   BMC GENOMICS

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

(2013) Laercio R Porto-Neto et al.   BMC GENOMICS

MicroRNAs Synergistically Regulate Milk Fat Synthesis in Mammary Gland Epithelial Cells of Dairy Goats

(2013) Xianzi Lin et al.   GENE EXPRESSION

Family of melanocortin receptor (MCR) genes in mammals—mutations, polymorphisms and phenotypic effects

(2013) M. Switonski et al.   JOURNAL OF APPLIED GENETICS

The origins of Chinese domestic cattle as revealed by ancient DNA analysis

(2013) Dawei Cai et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels

(2013) Jung-Woo Choi et al.   MOLECULES AND CELLS

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

Morphological and genetic evidence for early Holocene cattle management in northeastern China

(2013) Hucai Zhang et al.   Nature Communications

A genome-wide scan of selective sweeps in two broiler chicken lines divergently selected for abdominal fat content

(2012) Hui Zhang et al.   BMC GENOMICS

Genome Sequence and Assembly of Bos indicus

(2012) F. C. Canavez et al.   JOURNAL OF HEREDITY

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

(2012) Shancen Zhao et al.   NATURE GENETICS

The yak genome and adaptation to life at high altitude

(2012) Qiang Qiu et al.   NATURE GENETICS

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

(2012) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Muscle Gene Expression Associated with Increased Marbling in Beef Cattle

(2011) D. L. Clark et al.   ANIMAL BIOTECHNOLOGY

The SNP c.1326T>G in the non-SMC condensin I complex, subunit G (NCAPG) gene encoding a p.Ile442Met variant is associated with an increase in body frame size at puberty in cattle

(2011) K. Setoguchi et al.   ANIMAL GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Enterohaemorrhagic Escherichia coli requires the spectrin cytoskeleton for efficient attachment and pedestal formation on host cells

(2011) Tyson Joel Ruetz et al.   MICROBIAL PATHOGENESIS

Muscle transcriptomic analyses in Angus cattle with divergent tenderness

(2011) Chunping Zhao et al.   MOLECULAR BIOLOGY REPORTS

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Activin-related proteins in bovine mammary gland: Localization and differential expression during gestational development and differentiation

(2010) E. Bloise et al.   JOURNAL OF DAIRY SCIENCE

Molecular characterization and expression patterns of serine/arginine-rich specific kinase 3 (SPRK3) in porcine skeletal muscle

(2010) Yongjie Xu et al.   MOLECULAR BIOLOGY REPORTS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Tracking footprints of artificial selection in the dog genome

(2010) J. M. Akey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Sphingosine-1-phosphate as a mediator of high-density lipoprotein effects in cardiovascular protection

(2009) K. Sattler et al.   CARDIOVASCULAR RESEARCH

Dissection of Genetic Factors Modulating Fetal Growth in Cattle Indicates a Substantial Role of the Non-SMC Condensin I Complex, Subunit G (NCAPG) Gene

(2009) A. Eberlein et al.   GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Fine mapping and association analysis of a quantitative trait locus for milk production traits on Bos taurus autosome 4

(2009) G. Rincón et al.   JOURNAL OF DAIRY SCIENCE

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

(2009) et al.   SCIENCE

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intra-species variation, taxonomy and domestication

(2008) S. Hiendleder et al.   CYTOGENETIC AND GENOME RESEARCH

North American ice-sheet dynamics and the onset of 100,000-year glacial cycles

(2008) R. Bintanja et al.   NATURE

Factors affecting plasma progesterone in the early fetal period in high producing dairy cows

(2007) G. Bech-Sàbat et al.   THERIOGENOLOGY