Morphological and genetic evidence for early Holocene cattle management in northeastern China

Ancient DNA Analysis Affirms the Canid from Altai as a Primitive Dog

(2013) Anna S. Druzhkova et al.   PLoS One

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Comments on Germonpré et al., Journal of Archaeological Science 36, 2009 “Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes”, and Germonpré, Lázkičková-Galetová, and Sablin, Journal of Archaeological Science 39, 2012 “Palaeolithic dog skulls at the Gravettian Předmostí site, the Czech Republic”

(2012) Susan J. Crockford et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitogenomic analyses from ancient DNA

(2012) Johanna L.A. Paijmans et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Early millet use in northern China

(2012) X. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Age at death in cattle: methods, older cattle and known-age reference material

(2012) Gillian G Jones et al.   ENVIRONMENTAL ARCHAEOLOGY

Setting the stage – Building and working in an ancient DNA laboratory

(2011) Michael Knapp et al.   ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER

mapDamage: testing for damage patterns in ancient DNA sequences

(2011) Aurelien Ginolhac et al.   BIOINFORMATICS

The Complete Mitochondrial Genome of an 11,450-year-old Aurochsen (Bos primigenius) from Central Italy

(2011) Martina Lari et al.   BMC EVOLUTIONARY BIOLOGY

The origins of animal domestication and husbandry: A major change in the history of humanity and the biosphere

(2011) Jean-Denis Vigne   COMPTES RENDUS BIOLOGIES

Palaeolithic dog skulls at the Gravettian Předmostí site, the Czech Republic

(2011) Mietje Germonpré et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Early agricultural pathways: moving outside the ‘core area’ hypothesis in Southwest Asia

(2011) Dorian Q. Fuller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mitochondrial Genomes Reveal Slow Rates of Molecular Evolution and the Timing of Speciation in Beavers (Castor), One of the Largest Rodent Species

(2011) Susanne Horn et al.   PLoS One

A 33,000-Year-Old Incipient Dog from the Altai Mountains of Siberia: Evidence of the Earliest Domestication Disrupted by the Last Glacial Maximum

(2011) Nikolai D. Ovodov et al.   PLoS One

Cultivation as slow evolutionary entanglement: comparative data on rate and sequence of domestication

(2011) Dorian Q. Fuller et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

Comprehensive study of mtDNA among Southwest Asian dogs contradicts independent domestication of wolf, but implies dog-wolf hybridization

(2011) Arman Ardalan et al.   Ecology and Evolution

Crib-biting behavior in horses: A review

(2010) Carissa L. Wickens et al.   APPLIED ANIMAL BEHAVIOUR SCIENCE

ARCHAEOLOGICAL DATA REVEAL SLOW RATES OF EVOLUTION DURING PLANT DOMESTICATION

(2010) Michael D. Purugganan et al.   EVOLUTION

Early Neolithic pig domestication at Jiahu, Henan Province, China: clues from molar shape analyses using geometric morphometric approaches

(2010) T. Cucchi et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The Enigmatic Origin of Bovine mtDNA Haplogroup R: Sporadic Interbreeding or an Independent Event of Bos primigenius Domestication in Italy?

(2010) Silvia Bonfiglio et al.   PLoS One

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA

(2010) Greger Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Cytochrome bsequences of ancient cattle and wild ox support phylogenetic complexity in the ancient and modern bovine populations

(2009) F. Stock et al.   ANIMAL GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves

(2009) J.-F. Pang et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

A rapid column-based ancient DNA extraction method for increased sample throughput

(2009) NADIN ROHLAND et al.   Molecular Ecology Resources

The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome

(2009) Alessandro Achilli et al.   PLoS One

Pre-Neolithic wild boar management and introduction to Cyprus more than 11,400 years ago

(2009) J.-D. Vigne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago

(2009) H. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From wild animals to domestic pets, an evolutionary view of domestication

(2009) C. A. Driscoll et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of time budget of behaviors between penned and ranged young cattle focused on general and oral behaviors

(2008) Toshie ISHIWATA et al.   ANIMAL SCIENCE JOURNAL

Mitochondrial genomes of extinct aurochs survive in domestic cattle

(2008) Alessandro Achilli et al.   CURRENT BIOLOGY

Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes

(2008) Mietje Germonpré et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION