Diversity of the auxotrophic requirements in natural isolates of Escherichia coli

Fine-Scale Structure Analysis Shows Epidemic Patterns of Clonal Complex 95, a Cosmopolitan Escherichia coli Lineage Responsible for Extraintestinal Infection

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Experimental Evolution of Metabolic Dependency in Bacteria

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Interactions between genotype and environment drive the metabolic phenotype withinEscherichia coliisolates

(2015) Victor Sabarly et al.   ENVIRONMENTAL MICROBIOLOGY

Plasticity and epistasis strongly affect bacterial fitness after losing multiple metabolic genes

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Guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes

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LESS IS MORE: SELECTIVE ADVANTAGES CAN EXPLAIN THE PREVALENT LOSS OF BIOSYNTHETIC GENES IN BACTERIA

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Molecular evolution of the nicotinic acid requirement within the Shigella/EIEC pathotype

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Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

(2013) J. M. Monk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Adaptation through Loss of Function

(2013) Alison K. Hottes et al.   PLoS Genetics

Annotation of the Human Adult Urinary Metabolome and Metabolite Identification Using Ultra High Performance Liquid Chromatography Coupled to a Linear Quadrupole Ion Trap-Orbitrap Mass Spectrometer

(2012) Aurelie Roux et al.   ANALYTICAL CHEMISTRY

Variation in endogenous oxidative stress in Escherichia coli natural isolates during growth in urine

(2012) Cecile Aubron et al.   BMC MICROBIOLOGY

The Molecular Diversity of Adaptive Convergence

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The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

Escherichia coli physiology and metabolism dictates adaptation to diverse host microenvironments

(2011) Christopher J Alteri et al.   CURRENT OPINION IN MICROBIOLOGY

The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity

(2011) V. SABARLY et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Nicotinamide dependence of uropathogenic Escherichia coli UTI89 and application of nadB as a neutral insertion site

(2011) Z. Li et al.   MICROBIOLOGY-SGM

Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources

(2011) Tomohiro Shimada et al.   PLoS One

Two sources of endogenous hydrogen peroxide inEscherichia coli

(2010) Sergei Korshunov et al.   MOLECULAR MICROBIOLOGY

MicroScope: a platform for microbial genome annotation and comparative genomics

(2009) D. Vallenet et al.   Database-The Journal of Biological Databases and Curation

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY