Contrasting effects of environment and genetics generate a continuum of parallel evolution

Does plasticity enhance or dampen phenotypic parallelism? A test with three lake-stream stickleback pairs

(2015) K. B. Oke et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Covarying variances: more morphologically variable populations also exhibit more diet variation

(2015) Lisa K. Snowberg et al.   OECOLOGIA

Maintenance of a Genetic Polymorphism with Disruptive Natural Selection in Stickleback

(2014) Kerry B. Marchinko et al.   CURRENT BIOLOGY

Contemporary ecotypic divergence during a recent range expansion was facilitated by adaptive introgression

(2014) K. Lucek et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive divergence between lake and stream populations of an East African cichlid fish

(2014) Anya Theis et al.   MOLECULAR ECOLOGY

Intraspecific phenotypic variation among alewife populations drives parallel phenotypic shifts in bluegill

(2014) M. Huss et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Environmental drivers of demographics, habitat use, and behavior during a post-Pleistocene radiation of Bahamas mosquitofish (Gambusia hubbsi)

(2013) Justa L. Heinen et al.   EVOLUTIONARY ECOLOGY

Genomic evidence for the parallel evolution of coastal forms in theSenecio lautuscomplex

(2013) Federico Roda et al.   MOLECULAR ECOLOGY

Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping

(2013) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Exceptional Convergence on the Macroevolutionary Landscape in Island Lizard Radiations

(2013) D. L. Mahler et al.   SCIENCE

geomorph: anrpackage for the collection and analysis of geometric morphometric shape data

(2013) Dean C. Adams et al.   Methods in Ecology and Evolution

MULTIPLE EVOLUTIONARY PATHWAYS TO DECREASED LATERAL PLATE COVERAGE IN FRESHWATER THREESPINE STICKLEBACKS

(2012) Tuomas Leinonen et al.   EVOLUTION

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment

(2012) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Founder Effects Persist Despite Adaptive Differentiation: A Field Experiment with Lizards

(2012) J. J. Kolbe et al.   SCIENCE

PARALLEL AND NONPARALLEL ASPECTS OF ECOLOGICAL, PHENOTYPIC, AND GENETIC DIVERGENCE ACROSS REPLICATE POPULATION PAIRS OF LAKE AND STREAM STICKLEBACK

(2011) Renaud Kaeuffer et al.   EVOLUTION

Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions

(2011) B. E. Deagle et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A GENERAL FRAMEWORK FOR THE ANALYSIS OF PHENOTYPIC TRAJECTORIES IN EVOLUTIONARY STUDIES

(2009) Dean C. Adams et al.   EVOLUTION

VARIABLE PROGRESS TOWARD ECOLOGICAL SPECIATION IN PARAPATRY: STICKLEBACK ACROSS EIGHT LAKE-STREAM TRANSITIONS

(2009) Daniel Berner et al.   EVOLUTION

Reverse Evolution of Armor Plates in the Threespine Stickleback

(2008) Jun Kitano et al.   CURRENT BIOLOGY

Natural selection drives patterns of lake-stream divergence in stickleback foraging morphology

(2008) D. BERNER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Phenotypic Mismatches Reveal Escape from Arms-Race Coevolution

(2008) Charles T Hanifin et al.   PLOS BIOLOGY