Global Transcriptional Responses of the Toxic Cyanobacterium, Microcystis aeruginosa, to Nitrogen Stress, Phosphorus Stress, and Growth on Organic Matter

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Optimization of variable fluorescence measurements of phytoplankton communities with cyanobacteria

(2012) Stefan G. H. Simis et al.   PHOTOSYNTHESIS RESEARCH

Cyanobacteria and Cyanotoxins: The Influence of Nitrogen versus Phosphorus

(2012) Andrew M. Dolman et al.   PLoS One

Interannual Variability of Cyanobacterial Blooms in Lake Erie

(2012) Richard P. Stumpf et al.   PLoS One

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability

(2011) Anne W Thompson et al.   ISME Journal

Regulation of nitrate assimilation in cyanobacteria

(2011) Yoshitake Ohashi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Response of the Bloom-Forming Cyanobacterium, Microcystis aeruginosa, to Phosphorus Limitation

(2011) Matthew J. Harke et al.   MICROBIAL ECOLOGY

A Day in the Life of Microcystis aeruginosa Strain PCC 7806 as Revealed by a Transcriptomic Analysis

(2011) Cécile Straub et al.   PLoS One

Effects of nitrogenous compounds and phosphorus on the growth of toxic and non-toxic strains of Microcystis during cyanobacterial blooms

(2010) TW Davis et al.   AQUATIC MICROBIAL ECOLOGY

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens

(2010) Louie L. Wurch et al.   ENVIRONMENTAL MICROBIOLOGY

Functional Characterization of Synechocystis sp. Strain PCC 6803 pst1 and pst2 Gene Clusters Reveals a Novel Strategy for Phosphate Uptake in a Freshwater Cyanobacterium

(2010) F. D. Pitt et al.   JOURNAL OF BACTERIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

(2009) Stefan Klumpp et al.   CELL

The ecological stoichiometry of toxins produced by harmful cyanobacteria: an experimental test of the carbon-nutrient balance hypothesis

(2009) Dedmer B. Van de Waal et al.   ECOLOGY LETTERS

The effects of temperature and nutrients on the growth and dynamics of toxic and non-toxic strains of Microcystis during cyanobacteria blooms

(2009) Timothy W. Davis et al.   HARMFUL ALGAE

Nutrient limitation of Microcystis aeruginosa in northern California Klamath River reservoirs

(2009) Pia H. Moisander et al.   HARMFUL ALGAE

Ecological Genomics of Marine Picocyanobacteria

(2009) D. J. Scanlan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus

(2009) Erik R. Zinser et al.   PLoS One

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

(2008) Lionel Frangeul et al.   BMC GENOMICS

Effects of amino acids on microcystin production of the Microcystis aeruginosa

(2008) Ruihua Dai et al.   JOURNAL OF HAZARDOUS MATERIALS

ABC-type amino acid uptake transporters Bgt and N-II of Anabaena sp. strain PCC 7120 share an ATPase subunit and are expressed in vegetative cells and heterocysts

(2008) Rafael Pernil et al.   MOLECULAR MICROBIOLOGY

Advances in bacterial promoter recognition and its control by factors that do not bind DNA

(2008) Shanil P. Haugen et al.   NATURE REVIEWS MICROBIOLOGY