Standardization approaches in absolute quantitative proteomics with mass spectrometry

Absolute venomics: Absolute quantification of intact venom proteins through elemental mass spectrometry

(2017) Francisco Calderón-Celis et al.   Journal of Proteomics

“Heteroatom-tagged” quantification of proteins via ICP-MS

(2016) Alfredo Sanz-Medel   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Accurate Quantification of Selenoprotein P (SEPP1) in Plasma Using Isotopically Enriched Seleno-peptides and Species-Specific Isotope Dilution with HPLC Coupled to ICP-MS/MS

(2016) Christian L. Deitrich et al.   ANALYTICAL CHEMISTRY

Elemental Mass Spectrometry for Absolute Intact Protein Quantification without Protein-Specific Standards: Application to Snake Venomics

(2016) Francisco Calderón-Celis et al.   ANALYTICAL CHEMISTRY

Highly sensitive nanoparticle-based immunoassays with elemental detection: Application to Prostate-Specific Antigen quantification

(2016) Marta Garcia-Cortes et al.   BIOSENSORS & BIOELECTRONICS

Challenges in biomarker discovery with MALDI-TOF MS

(2016) Joanna Hajduk et al.   CLINICA CHIMICA ACTA

Preparation and characterisation of an 57Fe enriched haemoglobin spike material for species-specific isotope dilution mass spectrometry

(2016) C. Brauckmann et al.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY

In vivo synthesized 34S enriched amino acid standards for species specific isotope dilution of proteins

(2016) Gerrit Hermann et al.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY

RePLiCal: A QconCAT Protein for Retention Time Standardization in Proteomics Studies

(2016) Stephen W. Holman et al.   JOURNAL OF PROTEOME RESEARCH

CONSTANd : A Normalization Method for Isobaric Labeled Spectra by Constrained Optimization

(2016) Evelyne Maes et al.   MOLECULAR & CELLULAR PROTEOMICS

Peptide Biosynthesis with Stable Isotope Labeling from a Cell-free Expression System for Targeted Proteomics with Absolute Quantification

(2016) Feng Xian et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted absolute quantitative proteomics with SILAC internal standards and unlabeled full-length protein calibrators (TAQSI)

(2016) Xinwen Wang et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Profiling changes to natively-bound metals during Caenorhabditis elegans development

(2016) Dominic J. Hare et al.   RSC Advances

Quantitative Performance of Internal Standard Platforms for Absolute Protein Quantification Using Multiple Reaction Monitoring-Mass Spectrometry

(2015) Kerry Bauer Scott et al.   ANALYTICAL CHEMISTRY

Quantitative assessment of human serum transferrin receptor in breast cancer patients pre- and post-chemotherapy using peptide immunoaffinity enrichment coupled with targeted proteomics

(2015) Qingqing Xu et al.   CLINICA CHIMICA ACTA

Ten years of QconCATs: Application of multiplexed quantification to small medically relevant proteomes

(2015) Brahim Achour et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Determination of Cystatin C in human serum by isotope dilution mass spectrometry using mass overlapping peptides

(2015) Ana González-Antuña et al.   Journal of Proteomics

Ion Coalescence of Neutron Encoded TMT 10-Plex Reporter Ions

(2014) Thilo Werner et al.   ANALYTICAL CHEMISTRY

Simultaneous quantification of proteins in human serum via sulfur and iron using HPLC coupled to post-column isotope dilution mass spectrometry

(2014) Liuxing Feng et al.   Analytical Methods

From the Human Genome to the Human Proteome

(2014) Javier Muñoz et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

(2014) Emily S. Boja et al.   JOURNAL OF PROTEOME RESEARCH

MALDI imaging mass spectrometry: Spatial molecular analysis to enable a new age of discovery

(2014) Megan M. Gessel et al.   Journal of Proteomics

The use of elemental mass spectrometry in phosphoproteomic applications

(2014) Evelyne Maes et al.   MASS SPECTROMETRY REVIEWS

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

Top-down proteomics in health and disease: Challenges and opportunities

(2014) Zachery R. Gregorich et al.   PROTEOMICS

Nanoparticles: a global vision. Characterization, separation, and quantification methods. Potential environmental and health impact

(2013) Ana López-Serrano et al.   Analytical Methods

Protein Analysis by Shotgun/Bottom-up Proteomics

(2013) Yaoyang Zhang et al.   CHEMICAL REVIEWS

Inductively coupled plasma mass spectrometry-based immunoassay: A review

(2013) Rui Liu et al.   MASS SPECTROMETRY REVIEWS

Profiling the iron, copper and zinc content in primary neuron and astrocyte cultures by rapid online quantitative size exclusion chromatography-inductively coupled plasma-mass spectrometry

(2013) Dominic J. Hare et al.   Metallomics

Western BlotsversusSelected Reaction Monitoring Assays: Time to Turn the Tables?

(2013) Ruedi Aebersold et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

(2012) Marcus Bantscheff et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

An insight into iTRAQ: where do we stand now?

(2012) Caroline Evans et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Application of Metal-Coded Affinity Tags (MeCAT): Absolute Protein Quantification with Top-Down and Bottom-Up Workflows by Metal-Coded Tagging

(2012) U. Bergmann et al.   ANALYTICAL CHEMISTRY

Triple Quad ICPMS (ICPQQQ) as a New Tool for Absolute Quantitative Proteomics and Phosphoproteomics

(2012) Silvia Diez Fernández et al.   ANALYTICAL CHEMISTRY

Increasing the Multiplexing Capacity of TMTs Using Reporter Ion Isotopologues with Isobaric Masses

(2012) Graeme C. McAlister et al.   ANALYTICAL CHEMISTRY

Carbonyl-Reactive Tandem Mass Tags for the Proteome-Wide Quantification of N-Linked Glycans

(2012) Hannes Hahne et al.   ANALYTICAL CHEMISTRY

Elemental and molecular detection for Quantum Dots-based immunoassays: A critical appraisal

(2012) Antonio R. Montoro Bustos et al.   BIOSENSORS & BIOELECTRONICS

Comparison of different methods for the absolute quantification of harbour seal transferrin glycoforms using HPLC-ICP-MS

(2012) Mechthild Grebe et al.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY

Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli

(2012) L. Arike et al.   Journal of Proteomics

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

(2012) Birgit Schilling et al.   MOLECULAR & CELLULAR PROTEOMICS

Highly multiplexed targeted proteomics using precise control of peptide retention time

(2012) Sebastien Gallien et al.   PROTEOMICS

Using iRT, a normalized retention time for more targeted measurement of peptides

(2012) Claudia Escher et al.   PROTEOMICS

ICP-MS for absolute quantification of proteins for heteroatom-tagged, targeted proteomics

(2012) Alfredo Sanz-Medel et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Advancements in Top-Down Proteomics

(2011) Hu Zhou et al.   ANALYTICAL CHEMISTRY

Painting a Moving Picture: Large-Scale Proteomics Efforts and Their Potential for Changing Patient Care

(2011) A. N. Hoofnagle et al.   CLINICAL CHEMISTRY

Magnetic quantitative immunoanalysis of carcinoembryonic antigen by ICP-MS with mercury labels

(2011) Hanyong Peng et al.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY

CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches

(2011) Claire E. Eyers et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping intact protein isoforms in discovery mode using top-down proteomics

(2011) John C. Tran et al.   NATURE

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Less label, more free: Approaches in label-free quantitative mass spectrometry

(2011) Karlie A. Neilson et al.   PROTEOMICS

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Recombinant Isotope Labeled and Selenium Quantified Proteins for Absolute Protein Quantification

(2010) Nico Zinn et al.   ANALYTICAL CHEMISTRY

Determination of Protein Stoichiometry within Protein Complexes Using Absolute Quantification and Multiple Reaction Monitoring

(2010) Carla Schmidt et al.   ANALYTICAL CHEMISTRY

Synthesis of a Functional Metal-Chelating Polymer and Steps toward Quantitative Mass Cytometry Bioassays

(2010) Daniel Majonis et al.   ANALYTICAL CHEMISTRY

From Relative to Absolute Quantification of Tryptic Peptides with Tandem Mass Tags: Application to Cerebrospinal Fluid

(2010) Loïc Dayon et al.   CHIMIA

Evaluation of different analytical strategies for the quantification of sulfur-containing biomolecules by HPLC-ICP-MS: Application to the characterisation of 34S-labelled yeast

(2010) J. Giner Martínez-Sierra et al.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY

Proteomics: a pragmatic perspective

(2010) Parag Mallick et al.   NATURE BIOTECHNOLOGY

Minimally permutated peptide analogs as internal standards for relative and absolute quantification of peptides and proteins

(2010) Dominic Winter et al.   PROTEOMICS

Metal labeling for quantitative protein and proteome analysis using inductively-coupled plasma mass spectrometry

(2010) Andreas Tholey et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Capillary HPLC−ICPMS and Tyrosine Iodination for the Absolute Quantification of Peptides Using Generic Standards

(2009) Ana Pereira Navaza et al.   ANALYTICAL CHEMISTRY

Absolute and Relative Protein Quantification with the Use of Isotopically Labeledp-Hydroxymercuribenzoic Acid and Complementary MALDI-MS and ICPMS Detection

(2009) Daniel J. Kutscher et al.   ANALYTICAL CHEMISTRY

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Protein-Based Multiplex Assays: Mock Presubmissions to the US Food and Drug Administration

(2009) F. E. Regnier et al.   CLINICAL CHEMISTRY

Protein Quantification by Mass Spectrometry: Is It Ready for Prime Time?

(2009) E. P. Diamandis   CLINICAL CHEMISTRY

Quantitative Clinical Proteomics by Liquid Chromatography-Tandem Mass Spectrometry: Assessing the Platform

(2009) A. N. Hoofnagle   CLINICAL CHEMISTRY

The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry

(2009) Andrew N. Hoofnagle et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Phosphorus-Based Absolutely Quantified Standard Peptides for Quantitative Proteomics

(2009) Nico Zinn et al.   JOURNAL OF PROTEOME RESEARCH

FLEXIQuant: A Novel Tool for the Absolute Quantification of Proteins, and the Simultaneous Identification and Quantification of Potentially Modified Peptides

(2009) Sasha Singh et al.   JOURNAL OF PROTEOME RESEARCH

ICP-MS-Based strategies for protein quantification

(2009) Meng Wang et al.   MASS SPECTROMETRY REVIEWS

Halogenated Peptides as Internal Standards (H-PINS)

(2009) Hamid Mirzaei et al.   MOLECULAR & CELLULAR PROTEOMICS

A Robust Error Model for iTRAQ Quantification Reveals Divergent Signaling between Oncogenic FLT3 Mutants in Acute Myeloid Leukemia

(2009) Yi Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

MALDI Imaging Mass Spectrometry

(2009) Julien Franck et al.   MOLECULAR & CELLULAR PROTEOMICS

An Automated and Multiplexed Method for High Throughput Peptide Immunoaffinity Enrichment and Multiple Reaction Monitoring Mass Spectrometry-based Quantification of Protein Biomarkers

(2009) Jeffrey R. Whiteaker et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

(2009) Johan Malmström et al.   NATURE

Quantitative interaction proteomics using mass spectrometry

(2009) Alexander Wepf et al.   NATURE METHODS

Amine-reactive isobaric tagging reagents: Requirements for absolute quantification of proteins and peptides

(2008) M. Quaglia et al.   ANALYTICAL BIOCHEMISTRY

Absolute and Site-Specific Quantification of Protein Phosphorylation Using Integrated Elemental and Molecular Mass Spectrometry:  Its Potential To Assess Phosphopeptide Enrichment Procedures

(2008) Ana Pereira Navaza et al.   ANALYTICAL CHEMISTRY

HPLC−ICPMS and Stable Isotope-Labeled Approaches To Assess Quantitatively Ti(IV) Uptake by Transferrin in Human Blood Serum

(2008) Alejandro Sarmiento-González et al.   ANALYTICAL CHEMISTRY

Protein Quantification by Isotope Dilution Mass Spectrometry of Proteolytic Fragments: Cleavage Rate and Accuracy

(2008) Cristian G. Arsene et al.   ANALYTICAL CHEMISTRY

Relative Quantification of Proteins in Human Cerebrospinal Fluids by MS/MS Using 6-Plex Isobaric Tags

(2008) Loïc Dayon et al.   ANALYTICAL CHEMISTRY

Absolute Peptide Quantification by Lutetium Labeling and NanoHPLC−ICPMS with Isotope Dilution Analysis

(2008) Christina Rappel et al.   ANALYTICAL CHEMISTRY

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

Absolute SILAC for Accurate Quantitation of Proteins in Complex Mixtures Down to the Attomole Level

(2008) Stefan Hanke et al.   JOURNAL OF PROTEOME RESEARCH

Mass Spectrometry Based Targeted Protein Quantification: Methods and Applications

(2008) Sheng Pan et al.   JOURNAL OF PROTEOME RESEARCH

Counting sulfhydryls and disulfide bonds in peptides and proteins using mercurial ions as an MS-tag

(2008) Yifei Guo et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS