Diagnosability of mtDNA with Random Forests: Using sequence data to delimit subspecies

A review of molecular genetic markers and analytical approaches that have been used for delimiting marine mammal subspecies and species

(2017) Patricia E. Rosel et al.   MARINE MAMMAL SCIENCE

Guidelines and quantitative standards to improve consistency in cetacean subspecies and species delimitation relying on molecular genetic data

(2017) Barbara L. Taylor et al.   MARINE MAMMAL SCIENCE

Examining metrics and magnitudes of molecular genetic differentiation used to delimit cetacean subspecies based on mitochondrial DNA control region sequences

(2017) Patricia E. Rosel et al.   MARINE MAMMAL SCIENCE

Analytical approaches to subspecies delimitation with genetic data

(2017) Karen K. Martien et al.   MARINE MAMMAL SCIENCE

Why we should develop guidelines and quantitative standards for using genetic data to delimit subspecies for data-poor organisms like cetaceans

(2017) Barbara L. Taylor et al.   MARINE MAMMAL SCIENCE

Single Nucleotide Polymorphism (SNP) Variation of Wolves (Canis lupus) in Southeast Alaska and Comparison with Wolves, Dogs, and Coyotes in North America

(2014) Matthew A. Cronin et al.   JOURNAL OF HEREDITY

Nuclear and Mitochondrial Patterns of Population Structure in North Pacific False Killer Whales (Pseudorca crassidens)

(2014) K. K. Martien et al.   JOURNAL OF HEREDITY

Understanding the origin of species with genome-scale data: modelling gene flow

(2013) Vitor Sousa et al.   NATURE REVIEWS GENETICS

Mitogenomic Phylogenetics of Fin Whales (Balaenoptera physalus spp.): Genetic Evidence for Revision of Subspecies

(2013) Frederick I. Archer et al.   PLoS One

A comparative evaluation of sequence classification programs

(2012) Adam L Bazinet et al.   BMC BIOINFORMATICS

SNP interaction detection with Random Forests in high-dimensional genetic data

(2012) Stacey J Winham et al.   BMC BIOINFORMATICS

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?

(2012) W. G. Touw et al.   BRIEFINGS IN BIOINFORMATICS

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae

(2011) Julia T Vilstrup et al.   BMC EVOLUTIONARY BIOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes

(2011) Andrew D. Foote et al.   PLoS One

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Classification of Nucleotide Sequences Using Support Vector Machines

(2010) Tae-Kun Seo   JOURNAL OF MOLECULAR EVOLUTION

Distinguishing between two species of finless porpoises (Neophocaena phocaenoides and N. asiaeorientalis) in areas of sympatry

(2010) John Y. Wang et al.   MAMMALIA

Diagnostic single nucleotide polymorphisms for identifying westslope cutthroat trout (Oncorhynchus clarki lewisi), Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (Oncorhynchus mykiss)

(2010) S. T. KALINOWSKI et al.   Molecular Ecology Resources

Chapter 6: Subspecies as a Meaningful Taxonomic Rank in Avian Classification

(2010) J. V. Remsen et al.   ORNITHOLOGICAL MONOGRAPHS

Chapter 3: Null Expectations in Subspecies Diagnosis

(2010) Michael A. Patten   ORNITHOLOGICAL MONOGRAPHS

Chapter 1: Subspecies Represent Geographically Partitioned Variation, A Gold Mine of Evolutionary Biology, and a Challenge for Conservation

(2010) Kevin Winker   ORNITHOLOGICAL MONOGRAPHS

DNA barcode analysis: a comparison of phylogenetic and statistical classification methods

(2009) Frederic Austerlitz et al.   BMC BIOINFORMATICS

What are we dealing with? An explicit test reveals different levels of taxonomical diagnosability in the Sylvia cantillans species complex

(2009) Mattia Brambilla et al.   JOURNAL OF ORNITHOLOGY

Big and Slow: Phylogenetic Estimates of Molecular Evolution in Baleen Whales (Suborder Mysticeti)

(2009) J. A. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence date estimation and a comprehensive molecular tree of extant cetaceans

(2009) Michael R. McGowen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

(2008) A ECKERT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION