Genome Sequences of Marine Shrimp Exopalaemon carinicauda Holthuis Provide Insights into Genome Size Evolution of Caridea

Patterns of genome size variation in snapping shrimp

(2016) Nicholas W. Jeffery et al.   GENOME

CRISPR/Cas9-mediated Genome Editing and Mutagenesis of EcChi4 in Exopalaemon carinicauda

(2016) T. Gui et al.   G3-Genes Genomes Genetics

The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion

(2016) Damian Kao et al.   eLife

Draft genome of the Chinese mitten crab, Eriocheir sinensis

(2016) Linsheng Song et al.   GigaScience

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Do larger genomes contain more diverse transposable elements?

(2015) Tyler A Elliott et al.   BMC EVOLUTIONARY BIOLOGY

Genome analyses suggest the presence of polyploidy and recent human-driven expansions in eight global populations of the honeybee pathogenNosema ceranae

(2015) Adrian Pelin et al.   ENVIRONMENTAL MICROBIOLOGY

Analysis of ITS1 sequences and genetic relationships between populations of ridgetail white prawn, Exopalaemon carinicauda, in the East China Sea

(2015) X.Z. Zhang et al.   GENETICS AND MOLECULAR RESEARCH

Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs

(2015) N J Kenny et al.   HEREDITY

What's in a genome? The C-value enigma and the evolution of eukaryotic genome content

(2015) Tyler A. Elliott et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetics reveals the crustacean order Amphionidacea to be larval shrimps (Decapoda: Caridea)

(2015) Sammy De Grave et al.   Scientific Reports

Genome survey and high-density genetic map construction provide genomic and genetic resources for the Pacific White Shrimp Litopenaeus vannamei

(2015) Yang Yu et al.   Scientific Reports

Genomic Sequence and Experimental Tractability of a New Decapod Shrimp Model, Neocaridina denticulata

(2014) Nathan Kenny et al.   Marine Drugs

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication

(2014) Carlos W Nossa et al.   GigaScience

Enhanced resistance of marine shrimp Exopalamon carincauda Holthuis to WSSV by injecting live VP28-recombinant bacteria

(2013) Yumiao Sun et al.   ACTA OCEANOLOGICA SINICA

Horizontally transferred genes in the genome of Pacific white shrimp, Litopenaeus vannamei

(2013) Jian-Bo Yuan et al.   BMC EVOLUTIONARY BIOLOGY

Exceptionally high cumulative percentage of NUMTs originating from linear mitochondrial DNA molecules in the Hydra magnipapillata genome

(2013) Shen Song et al.   BMC GENOMICS

L_RNA_scaffolder: scaffolding genomes with transcripts

(2013) Wei Xue et al.   BMC GENOMICS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

TreeFam v9: a new website, more species and orthology-on-the-fly

(2013) Fabian Schreiber et al.   NUCLEIC ACIDS RESEARCH

Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes

(2012) Feng-Jiau Lin et al.   BMC GENOMICS

Comparative transcriptomic analysis of streptococcus pseudopneumoniae with viridans group streptococci

(2012) Hee Park et al.   BMC MICROBIOLOGY

Immune gene discovery by expressed sequence tag (EST) analysis of hemocytes in the ridgetail white prawn Exopalaemon carinicauda

(2012) Yafei Duan et al.   FISH & SHELLFISH IMMUNOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Pathogen-origin horizontally transferred genes contribute to the evolution of Lepidopteran insects

(2011) Zi-Wen Li et al.   BMC EVOLUTIONARY BIOLOGY

Horizontal gene transfer in silkworm, Bombyx mori

(2011) Bo Zhu et al.   BMC GENOMICS

The first genome size estimates for six species of krill (Malacostraca, Euphausiidae): large genomes at the north and south poles

(2011) Nicholas W. Jeffery   POLAR BIOLOGY

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Bacterial Genes in the Aphid Genome: Absence of Functional Gene Transfer from Buchnera to Its Host

(2010) Naruo Nikoh et al.   PLoS Genetics

Oenococcus oeni Genome Plasticity Is Associated with Fitness

(2009) E. Bon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

On the need for widespread horizontal gene transfers under genome size constraint

(2009) Hervé Isambert et al.   Biology Direct

The complete mitochondrial genome of the ridgetail white prawn Exopalaemon carinicauda Holthuis, 1950 (Crustacean: Decapoda: Palaemonidae) revealed a novel rearrangement of tRNA genes

(2009) Xin Shen et al.   GENE

Survey of genome size in 28 hydrothermal vent species covering 10 families

(2009) Eric Bonnivard et al.   GENOME

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

The impact of long-distance horizontal gene transfer on prokaryotic genome size

(2009) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome

(2009) D. L. Adelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The frequency of polyploid speciation in vascular plants

(2009) T. E. Wood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda)

(2009) Heather D. Bracken et al.   ZOOLOGICA SCRIPTA

Large genomes among caridean shrimp

(2008) David J. Rees et al.   GENOME

Genome size evolution: Within-species variation in genome size

(2008) C Biémont   HEREDITY