Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs

Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal

(2014) Prashant P. Sharma et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hox gene duplications correlate with posterior heteronomy in scorpions

(2014) P. P. Sharma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication

(2014) Carlos W Nossa et al.   GigaScience

Molecular Timetrees Reveal a Cambrian Colonization of Land and a New Scenario for Ecdysozoan Evolution

(2013) Omar Rota-Stabelli et al.   CURRENT BIOLOGY

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

(2013) Jeramiah J Smith et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Silurian horseshoe crab illuminates the evolution of arthropod limbs

(2012) D. E. G. Briggs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polyploidy in fungi: evolution after whole-genome duplication

(2012) W. Albertin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of homeobox genes

(2012) Peter W. H. Holland   Wiley Interdisciplinary Reviews-Developmental Biology

The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages

(2011) Ying-fu Zhong et al.   BMC EVOLUTIONARY BIOLOGY

HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology

(2011) Ying-fu Zhong et al.   EVOLUTION & DEVELOPMENT

Extensive Chordate and Annelid Macrosynteny Reveals Ancestral Homeobox Gene Organization

(2011) J. H. L. Hui et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of extant horseshoe crabs (Xiphosura, Limulidae) indicates Paleogene diversification of Asian species

(2011) Matthias Obst et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The genome of Tetranychus urticae reveals herbivorous pest adaptations

(2011) Miodrag Grbić et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster

(2010) Jerome H. L. Hui et al.   EVOLUTION & DEVELOPMENT

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia

(2010) Maureen E Mazza et al.   EvoDevo

Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes

(2009) Jerome HL Hui et al.   BMC BIOLOGY

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

“Changing by doubling”, the impact of Whole Genome Duplications in the evolution of eukaryotes

(2008) Olivier Jaillon et al.   COMPTES RENDUS BIOLOGIES

HomeoDB: a database of homeobox gene diversity

(2008) Ying-Fu Zhong et al.   EVOLUTION & DEVELOPMENT

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Genesis and Expansion of Metazoan Transcription Factor Gene Classes

(2008) Claire Larroux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE