Genome analyses suggest the presence of polyploidy and recent human-driven expansions in eight global populations of the honeybee pathogenNosema ceranae

The spread of pathogens through trade in honey bees and their products (including queen bees and semen): overview and recent developments

(2016) F. MUTINELLI   REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES

Recent worldwide expansion of Nosema ceranae (Microsporidia) in Apis mellifera populations inferred from multilocus patterns of genetic variation

(2015) T. Gómez-Moracho et al.   INFECTION GENETICS AND EVOLUTION

Infectivity and virulence of Nosema ceranae and Nosema apis in commercially available North American honey bees

(2015) Wei-Fone Huang et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Comparative virulence and competition between Nosema apis and Nosema ceranae in honey bees (Apis mellifera)

(2015) Meghan O. Milbrath et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

A case report ofNosema ceranaeinfection in honey bees in Minnesota, USA

(2015) Aschalew Z. Bekele et al.   VETERINARY QUARTERLY

The Ordospora colligata Genome: Evolution of Extreme Reduction in Microsporidia and Host-To-Parasite Horizontal Gene Transfer

(2015) Jean-François Pombert et al.   mBio

Evidence for weak genetic recombination at thePTP2locus ofNosema ceranae

(2014) Tamara Gómez-Moracho et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies

(2014) Leszek P. Pryszcz et al.   Genome Biology and Evolution

Presence of Nosema ceranae associated with honeybee queen introductions

(2014) Irene Muñoz et al.   INFECTION GENETICS AND EVOLUTION

A Comparison of Next Generation Sequencing Technologies for Transcriptome Assembly and Utility for RNA-Seq in a Non-Model Bird

(2014) Findley R. Finseth et al.   PLoS One

Genomic Confirmation of Hybridisation and Recent Inbreeding in a Vector-Isolated Leishmania Population

(2014) Matthew B. Rogers et al.   PLoS Genetics

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation

(2013) Guoqing Pan et al.   BMC GENOMICS

Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions

(2013) Yan ping Chen et al.   BMC GENOMICS

Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia

(2013) Timothy Y. James et al.   CURRENT BIOLOGY

Extremely Reduced Levels of Heterozygosity in the Vertebrate Pathogen Encephalitozoon cuniculi

(2013) Mohammed Selman et al.   EUKARYOTIC CELL

Ribosomal Gene Polymorphism in Small Genomes: Analysis of Different 16S rRNA Sequences Expressed in the Honeybee ParasiteNosema ceranae(Microsporidia)

(2013) Soledad Sagastume et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

High levels of genetic diversity in Nosema ceranae within Apis mellifera colonies

(2013) TAMARA GÓMEZ-MORACHO et al.   PARASITOLOGY

New insights on the genetic diversity of the honeybee parasite Nosema ceranae based on multilocus sequence analysis

(2013) MATHIEU ROUDEL et al.   PARASITOLOGY

Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data

(2013) Erica Bree Rosenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Do the honeybee pathogensNosema ceranaeand deformed wing virus act synergistically?

(2013) Stephen J. Martin et al.   Environmental Microbiology Reports

Virulence and polar tube protein genetic diversity ofNosema ceranae(Microsporidia) field isolates from Northern and Southern Europe in honeybees (Apis mellifera iberiensis)

(2013) Romee Van der Zee et al.   Environmental Microbiology Reports

High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus

(2013) Wenming Zheng et al.   Nature Communications

Chromosomal Copy Number Variation, Selection and Uneven Rates of Recombination Reveal Cryptic Genome Diversity Linked to Pathogenicity

(2013) Rhys A. Farrer et al.   PLoS Genetics

Transmission of Hypervirulence Traits via Sexual Reproduction within and between Lineages of the Human Fungal Pathogen Cryptococcus gattii

(2013) Kerstin Voelz et al.   PLoS Genetics

Nosema ceranae Escapes Fumagillin Control in Honey Bees

(2013) Wei-Fone Huang et al.   PLoS Pathogens

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth

(2012) C. A. Cuomo et al.   GENOME RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Further evidence of an oriental origin for Nosema ceranae (Microsporidia: Nosematidae)

(2012) Cristina Botías et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Pesticide exposure in honey bees results in increased levels of the gut pathogen Nosema

(2012) Jeffery S. Pettis et al.   NATURWISSENSCHAFTEN

Predictive Markers of Honey Bee Colony Collapse

(2012) Benjamin Dainat et al.   PLoS One

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

(2012) Alison F. Feder et al.   PLoS One

Annotation of microsporidian genomes using transcriptional signals

(2012) Eric Peyretaillade et al.   Nature Communications

Genetic Diversity and Genomic Plasticity of Cryptococcus neoformans AD Hybrid Strains

(2012) Wenjun Li et al.   G3-Genes Genomes Genetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Microsporidiosis

(2011) Elizabeth S. Didier et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

(2011) M. B. Rogers et al.   GENOME RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Polymorphism and recombination for rDNA in the putatively asexual microsporidian Nosema ceranae , a pathogen of honeybees

(2010) Soledad Sagastume et al.   ENVIRONMENTAL MICROBIOLOGY

Colony losses in the Netherlands

(2010) Romée van der Zee   JOURNAL OF APICULTURAL RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Global pollinator declines: trends, impacts and drivers

(2010) Simon G. Potts et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic Characterization of Commercial Honey Bee (Hymenoptera: Apidae) Populations in the United States by Using Mitochondrial and Microsatellite Markers

(2009) D. A. Delaney et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Global Stock of Domesticated Honey Bees Is Growing Slower Than Agricultural Demand for Pollination

(2009) Marcelo A. Aizen et al.   CURRENT BIOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

Mitotic Recombination: Why? When? How? Where?

(2009) Matthew C. LaFave et al.   PLoS Genetics

Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees

(2009) R. Scott Cornman et al.   PLoS Pathogens

How natural infection by Nosema ceranae causes honeybee colony collapse

(2008) Mariano Higes et al.   ENVIRONMENTAL MICROBIOLOGY