Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation

Prediction of Scylla olivacea (Crustacea; Brachyura) peptide hormones using publicly accessible transcriptome shotgun assembly (TSA) sequences

(2016) Andrew E. Christie   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Size distribution, length–weight relationship and size at the onset of sexual maturity of the orange mud crab,Scylla olivacea, in Malaysian waters

(2016) Khor Waiho et al.   Marine Biology Research

Identification of Immune-Related Genes and Development of SSR/SNP Markers from the Spleen Transcriptome of Schizothorax prenanti

(2016) Hui Luo et al.   PLoS One

Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation

(2015) Yuichiro Hara et al.   BMC GENOMICS

Gene expression profile analysis of testis and ovary of oriental river prawn, Macrobrachium nipponense, reveals candidate reproduction-related genes

(2015) H. Qiao et al.   GENETICS AND MOLECULAR RESEARCH

Cloning of the Ecdysone Receptor Gene from the Chinese Mitten Crab,Eriocheir sinensis, and Sexually Dimorphic Expression of Two Splice Variants

(2015) Huaishun Shen et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Anti-Inflammatory Peptide Regulates the Supply of Heat Shock Protein 70 Monomers: Implications for Aging and Age-Related Disease

(2015) Timothy J. Cunningham et al.   REJUVENATION RESEARCH

De novo and comparative transcriptome analysis of cultivated and wild spinach

(2015) Chenxi Xu et al.   Scientific Reports

Neuropeptides in the cerebral ganglia of the mud crab, Scylla paramamosain: transcriptomic analysis and expression profiles during vitellogenesis

(2015) Chenchang Bao et al.   Scientific Reports

De novo Transcriptome Analysis of Portunus trituberculatus Ovary and Testis by RNA-Seq: Identification of Genes Involved in Gonadal Development

(2015) Xian-liang Meng et al.   PLoS One

Two beta-pigment-dispersing hormone (β-PDH) isoforms in the mud crab, Scylla paramamosain: Implication for regulation of ovarian maturation and a photoperiod-related daily rhythmicity

(2014) Xiaoshuai Huang et al.   ANIMAL REPRODUCTION SCIENCE

Crybb2 deficiency impairs fertility in female mice

(2014) Qian Gao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptome analysis of the differences in gene expression between testis and ovary in green mud crab (Scylla paramamosain)

(2014) Jie Gao et al.   BMC GENOMICS

Steroid signaling promotes stem cell maintenance in the Drosophila testis

(2014) Yijie Li et al.   DEVELOPMENTAL BIOLOGY

Roles of ecdysteroids for progression of reproductive cycle in the fresh water crustacean Daphnia magna

(2014) Eri Sumiya et al.   Frontiers in Zoology

SNP Discovery from Transcriptome of the Swimbladder of Takifugu rubripes

(2014) Jun Cui et al.   PLoS One

Transcriptome Analysis of the Portunus trituberculatus: De Novo Assembly, Growth-Related Gene Identification and Marker Discovery

(2014) Jianjian Lv et al.   PLoS One

Transcriptome Analysis of the Mud Crab (Scylla paramamosain) by 454 Deep Sequencing: Assembly, Annotation, and Marker Discovery

(2014) Hongyu Ma et al.   PLoS One

Identification of Genes Associated with Reproduction in the Mud Crab (Scylla olivacea) and Their Differential Expression following Serotonin Stimulation

(2014) Napamanee Kornthong et al.   PLoS One

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture

(2014) Noushin Ghaffari et al.   Scientific Reports

Characterization of the shrimp neuroparsin (MeNPLP): RNAi silencing resulted in inhibition of vitellogenesis

(2014) Shi Ping Yang et al.   FEBS Open Bio

Characterization and analysis of a transcriptome from the boreal spider crab Hyas araneus

(2013) Lars Harms et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Development and Validation of Single Nucleotide Polymorphisms (SNPs) Markers from Two Transcriptome 454-Runs of Turbot (Scophthalmus maximus) Using High-Throughput Genotyping

(2013) Manuel Vera et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Neuronal classification and distribution in the central nervous system of the female mud crab,Scylla olivacea

(2013) Napamanee Kornthong et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Mitochondrial DNA diversity of mud crab Scylla olivacea (Portunidae) in Peninsular Malaysia: a preliminary assessment

(2013) Hurul Adila-Aida Mohamad Rosly et al.   MOLECULAR BIOLOGY REPORTS

Accuracy of allele frequency estimation using pooled RNA-Seq

(2013) M. Konczal et al.   Molecular Ecology Resources

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome

(2013) Fanyue Sun et al.   PLoS One

Transcriptome Analysis of Litopenaeus vannamei in Response to White Spot Syndrome Virus Infection

(2013) Xiaohan Chen et al.   PLoS One

Transcriptome Analysis of Androgenic Gland for Discovery of Novel Genes from the Oriental River Prawn, Macrobrachium nipponense, Using Illumina Hiseq 2000

(2013) Shubo Jin et al.   PLoS One

Insights into the Prostanoid Pathway in the Ovary Development of the Penaeid Shrimp Penaeus monodon

(2013) Wananit Wimuttisuk et al.   PLoS One

Transcriptome Profiling Analysis on Whole Bodies of Microbial Challenged Eriocheir sinensis Larvae for Immune Gene Identification and SNP Development

(2013) Zhaoxia Cui et al.   PLoS One

Multiple pathways mediate the sex-peptide-regulated switch in female Drosophila reproductive behaviours

(2013) I. U. Haussmann et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The potential roles of neurotrophins in male reproduction

(2013) Chunjin Li et al.   REPRODUCTION

Probing the architecture of testis and morphology of male germinal cells in the mud crab with the atomic force microscopy

(2013) Mahalingam ANBARASU et al.   TURKISH JOURNAL OF BIOLOGY

Characterization of the vasa gene in the Chinese mitten crab Eriocheir sinensis: A germ line molecular marker

(2012) Qun Wang et al.   JOURNAL OF INSECT PHYSIOLOGY

Transcriptome Profiling of Testis during Sexual Maturation Stages in Eriocheir sinensis Using Illumina Sequencing

(2012) Lin He et al.   PLoS One

RNA-Seq Identifies SNP Markers for Growth Traits in Rainbow Trout

(2012) Mohamed Salem et al.   PLoS One

Genome-Wide SNP Discovery from Transcriptome of Four Common Carp Strains

(2012) Jian Xu et al.   PLoS One

Crustacean Hyperglycemic Hormone (cHH) as a Modulator of Aggression in Crustacean Decapods

(2012) Laura Aquiloni et al.   PLoS One

Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach

(2012) Ruijia Wang et al.   Freshwater Science

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

(2011) Shikai Liu et al.   BMC GENOMICS

Biological information and population features of mud crab, genus Scylla from mangrove areas of Sarawak, Malaysia

(2011) M. Ikhwanuddin et al.   FISHERIES RESEARCH

Identification ofvasa, a potential marker of primordial germ cells in the spider crabMaja brachydactyla,and its expression during early post-embryonic development

(2011) Carles G. Simeó et al.   INVERTEBRATE REPRODUCTION & DEVELOPMENT

A vasa gene from green mud crab Scylla paramamosain and its expression during gonadal development and gametogenesis

(2011) Yilei Wang et al.   MOLECULAR BIOLOGY REPORTS

Transcriptomics of a Giant Freshwater Prawn (Macrobrachium rosenbergii): De Novo Assembly, Annotation and Marker Discovery

(2011) Hyungtaek Jung et al.   PLoS One

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Expression levels of RuvBL2 during ovarian development and association between its single nucleotide polymorphism (SNP) and growth of the giant tiger shrimp Penaeus monodon

(2010) Sirikan Prasertlux et al.   AQUACULTURE

Single nucleotide polymorphisms in the actin and crustacean hyperglycemic hormone genes and their correlation with individual growth performance in giant freshwater prawn Macrobrachium rosenbergii

(2010) Nguyen Minh Thanh et al.   AQUACULTURE

Crustacean neuropeptides

(2010) Andrew E. Christie et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Cloning, characterization, and expression analysis of the DEAD-box family genes, Fc-vasa and Fc-PL10a, in Chinese shrimp (Fenneropenaeus chinensis)

(2010) Qianru Zhou et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

A novel Dmrt gene is specifically expressed in the testis of Chinese mitten crab, Eriocheir sinensis

(2010) En-Fan Zhang et al.   DEVELOPMENT GENES AND EVOLUTION

A transcriptome analysis of mitten crab testes (Eriocheir sinensis)

(2010) Wei Zhang et al.   GENETICS AND MOLECULAR BIOLOGY

What the loss of the hormone neuroparsin in the melanogaster subgroup of Drosophila can tell us about its function

(2010) Jan A. Veenstra   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Reproductive regulators in decapod crustaceans: an overview

(2010) G. P. C. Nagaraju   JOURNAL OF EXPERIMENTAL BIOLOGY

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonusspp. Salmonidae)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database

(2010) Abderrahmane Tagmount et al.   PLoS One

Mammalian oocytes are targets for prostaglandin E2 (PGE2) action

(2010) Diane M Duffy et al.   Reproductive Biology and Endocrinology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery

(2009) Matthew C Hale et al.   BMC GENOMICS

Germ cells in the crustacean Parhyale hawaiensis depend on Vasa protein for their maintenance but not for their formation

(2008) Günes Özhan-Kizil et al.   DEVELOPMENTAL BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH