Optimizing computer models of corticospinal neurons to replicate in vitro dynamics

Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons

(2016) Timothy H. Rumbell et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Is realistic neuronal modeling realistic?

(2016) Mara Almog et al.   JOURNAL OF NEUROPHYSIOLOGY

Global dynamics of selective attention and its lapses in primary auditory cortex

(2016) Peter Lakatos et al.   NATURE NEUROSCIENCE

Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex

(2016) S.A. Neymotin et al.   NEUROSCIENCE

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

(2016) Werner Van Geit et al.   Frontiers in Neuroinformatics

Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex

(2016) Samuel A. Neymotin et al.   Frontiers in Pharmacology

Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types

(2015) Shreejoy J. Tripathy et al.   JOURNAL OF NEUROPHYSIOLOGY

Reciprocal Interareal Connections to Corticospinal Neurons in Mouse M1 and S2

(2015) B. A. Suter et al.   JOURNAL OF NEUROSCIENCE

Synaptic Circuit Organization of Motor Corticothalamic Neurons

(2015) N. Yamawaki et al.   JOURNAL OF NEUROSCIENCE

Distribution and Function of HCN Channels in the Apical Dendritic Tuft of Neocortical Pyramidal Neurons

(2015) M. T. Harnett et al.   JOURNAL OF NEUROSCIENCE

Neuronal Calcium Wave Propagation Varies with Changes in Endoplasmic Reticulum Parameters: A Computer Model

(2015) Samuel A. Neymotin et al.   NEURAL COMPUTATION

Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex

(2014) Samuel A Neymotin et al.   BMC NEUROSCIENCE

Protein kinase C activation mediates interferon-β-induced neuronal excitability changes in neocortical pyramidal neurons

(2014) Olivia Reetz et al.   Journal of Neuroinflammation

A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons

(2014) M. Almog et al.   JOURNAL OF NEUROSCIENCE

Using Multi-Compartment Ensemble Modeling As an Investigative Tool of Spatially Distributed Biophysical Balances: Application to Hippocampal Oriens-Lacunosum/Moleculare (O-LM) Cells

(2014) Vladislav Sekulić et al.   PLoS One

Spatially Distributed Dendritic Resonance Selectively Filters Synaptic Input

(2014) Jonathan Laudanski et al.   PLoS Computational Biology

The Spectrotemporal Filter Mechanism of Auditory Selective Attention

(2013) Peter Lakatos et al.   NEURON

Potassium Channels Control the Interaction between Active Dendritic Integration Compartments in Layer 5 Cortical Pyramidal Neurons

(2013) Mark T. Harnett et al.   NEURON

Ih Tunes Theta/Gamma Oscillations and Cross-Frequency Coupling In an In Silico CA3 Model

(2013) Samuel A. Neymotin et al.   PLoS One

High Prevalence of Multistability of Rest States and Bursting in a Database of a Model Neuron

(2013) Bóris Marin et al.   PLoS Computational Biology

Elevation in Type I Interferons Inhibits HCN1 and Slows Cortical Neuronal Oscillations

(2012) Konstantin Stadler et al.   CEREBRAL CORTEX

Intrinsic Electrophysiology of Mouse Corticospinal Neurons: a Class-Specific Triad of Spike-Related Properties

(2012) B. A. Suter et al.   CEREBRAL CORTEX

Hierarchical Connectivity and Connection-Specific Dynamics in the Corticospinal-Corticostriatal Microcircuit in Mouse Motor Cortex

(2012) T. Kiritani et al.   JOURNAL OF NEUROSCIENCE

Laminarly Orthogonal Excitation of Fast-Spiking and Low-Threshold-Spiking Interneurons in Mouse Motor Cortex

(2012) A. J. Apicella et al.   JOURNAL OF NEUROSCIENCE

Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data

(2012) Armin Bahl et al.   JOURNAL OF NEUROSCIENCE METHODS

A database of computational models of a half-center oscillator for analyzing how neuronal parameters influence network activity

(2011) Anca Doloc-Mihu et al.   JOURNAL OF BIOLOGICAL PHYSICS

Corticospinal-specific HCN expression in mouse motor cortex: Ih-dependent synaptic integration as a candidate microcircuit mechanism involved in motor control

(2011) Patrick L. Sheets et al.   JOURNAL OF NEUROPHYSIOLOGY

Attentional Modulation of Alpha Oscillations in Macaque Inferotemporal Cortex

(2011) J. Mo et al.   JOURNAL OF NEUROSCIENCE

Dual Gamma Rhythm Generators Control Interlaminar Synchrony in Auditory Cortex

(2011) M. Ainsworth et al.   JOURNAL OF NEUROSCIENCE

Ephus: multipurpose data acquisition software for neuroscience experiments

(2011) Benjamin Suter   Frontiers in Neural Circuits

Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties

(2011) Etay Hay et al.   PLoS Computational Biology

Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex

(2010) Charles T Anderson et al.   NATURE NEUROSCIENCE

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Distinct contributions of Nav1.6 and Nav1.2 in action potential initiation and backpropagation

(2009) Wenqin Hu et al.   NATURE NEUROSCIENCE

Database Analysis of Simulated and Recorded Electrophysiological Datasets with PANDORA’s Toolbox

(2009) Cengiz Günay et al.   NEUROINFORMATICS

Automated neuron model optimization techniques: a review

(2008) W. Van Geit et al.   BIOLOGICAL CYBERNETICS

Channel Density Distributions Explain Spiking Variability in the Globus Pallidus: A Combined Physiology and Computer Simulation Database Approach

(2008) C. Gunay et al.   JOURNAL OF NEUROSCIENCE

Entrainment of Neuronal Oscillations as a Mechanism of Attentional Selection

(2008) P. Lakatos et al.   SCIENCE

Low-frequency neuronal oscillations as instruments of sensory selection

(2008) Charles E. Schroeder et al.   TRENDS IN NEUROSCIENCES

A benchmark test for a quantitative assessment of simple neuron models

(2007) Renaud Jolivet et al.   JOURNAL OF NEUROSCIENCE METHODS