Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and C. difficile 630

A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeonSulfolobus solfataricusin response to the carbon source L-fucose versus D-glucose

(2016) Jacqueline Wolf et al.   MOLECULAR MICROBIOLOGY

Complete genome sequence of Peptoclostridium difficile strain Z31

(2016) Felipe L. Pereira et al.   Gut Pathogens

What's a SNP between friends: The influence of single nucleotide polymorphisms on virulence and phenotypes of Clostridium difficile strain 630 and derivatives

(2016) Mark M. Collery et al.   Virulence

Complete genome sequence of the Clostridium difficile laboratory strain 630Δerm reveals differences from strain 630, including translocation of the mobile element CTn5

(2015) Erika van Eijk et al.   BMC GENOMICS

Time-resolved amino acid uptake of Clostridium difficile 630Δerm and concomitant fermentation product and toxin formation

(2015) Meina Neumann-Schaal et al.   BMC MICROBIOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism

(2014) Laura J Pettit et al.   BMC GENOMICS

Microbial Bile Acid Metabolic Clusters: The Bouncers at the Bar

(2014) Joseph A. Sorg   Cell Host & Microbe

A novel mode of lactate metabolism in strictly anaerobic bacteria

(2014) Marie Charlotte Weghoff et al.   ENVIRONMENTAL MICROBIOLOGY

The post-translational modification of theClostridium difficileflagellin affects motility, cell surface properties and virulence

(2014) Alexandra Faulds-Pain et al.   MOLECULAR MICROBIOLOGY

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Lactate racemase is a nickel-dependent enzyme activated by a widespread maturation system

(2014) Benoît Desguin et al.   Nature Communications

Clostridium difficile glutamate dehydrogenase is a secreted enzyme that confers resistance to H2O2

(2013) B. P. Girinathan et al.   MICROBIOLOGY-SGM

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Reannotation of the genome sequence of Clostridium difficile strain 630

(2011) M. Monot et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation

(2010) C Bannert et al.   BMC BIOINFORMATICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A novel genetic switch controls phase variable expression of CwpV, aClostridium difficilecell wall protein

(2009) Jenny E. Emerson et al.   MOLECULAR MICROBIOLOGY

Growth phase-dependent global protein and metabolite profiles ofPhaeobacter gallaeciensisstrain DSM 17395, a member of the marineRoseobacter-clade

(2009) Hajo Zech et al.   PROTEOMICS

Bile Salts and Glycine as Cogerminants for Clostridium difficile Spores

(2008) J. A. Sorg et al.   JOURNAL OF BACTERIOLOGY