Enhancing faba bean (Vicia faba L.) genome resources

Genome-wide analysis of LTR-retrotransposon expression in leaves of Populus × canadensis water-deprived plants

(2016) Tommaso Giordani et al.   Tree Genetics & Genomes

LTR retrotransposons, handy hitchhikers of plant regulation and stress response

(2015) Marie-Angèle Grandbastien   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Differential transcriptional networks associated with key phases of ingrowth wall construction in trans-differentiating epidermal transfer cells of Vicia faba cotyledons

(2015) Hui-Ming Zhang et al.   BMC PLANT BIOLOGY

Dynamics of chloroplast genomes in green plants

(2015) Jian-Hong Xu et al.   GENOMICS

A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.)

(2015) Anne Webb et al.   PLANT BIOTECHNOLOGY JOURNAL

Estimating variability in grain legume yields across Europe and the Americas

(2015) Charles Cernay et al.   Scientific Reports

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Legume genomics: understanding biology through DNA and RNA sequencing

(2014) Jamie A. O'Rourke et al.   ANNALS OF BOTANY

Two Distinct Plastid Genome Configurations and Unprecedented Intraspecies Length Variation in the accD Coding Region in Medicago truncatula

(2014) C. Gurdon et al.   DNA RESEARCH

50 year trends in nitrogen use efficiency of world cropping systems: the relationship between yield and nitrogen input to cropland

(2014) Luis Lassaletta et al.   Environmental Research Letters

Does growing grain legumes or applying lime cost effectively lower greenhouse gas emissions from wheat production in a semi-arid climate?

(2014) Louise Barton et al.   JOURNAL OF CLEANER PRODUCTION

Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes

(2014) Jamal Sabir et al.   PLANT BIOTECHNOLOGY JOURNAL

Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.)

(2014) Hamid Khazaei et al.   THEORETICAL AND APPLIED GENETICS

Repression of Essential Chloroplast Genes Reveals New Signaling Pathways and Regulatory Feedback Loops inChlamydomonas

(2013) Silvia Ramundo et al.   PLANT CELL

Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages

(2013) M. Rousseau-Gueutin et al.   PLANT PHYSIOLOGY

High-throughput novel microsatellite marker of faba bean via next generation sequencing

(2012) Tao Yang et al.   BMC GENOMICS

Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers

(2012) Sukhjiwan Kaur et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Microarray Analysis of LTR Retrotransposon Silencing Identifies Hdac1 as a Regulator of Retrotransposon Expression in Mouse Embryonic Stem Cells

(2012) Judith Reichmann et al.   PLoS Computational Biology

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

(2011) Jaime I Davila et al.   BMC BIOLOGY

The intriguing evolutionary dynamics of plant mitochondrial DNA

(2011) Nicolas Galtier   BMC BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Marker-assisted selection in faba bean (Vicia faba L.)

(2009) A.M. Torres et al.   FIELD CROPS RESEARCH

Bioactive proteins and peptides in pulse crops: Pea, chickpea and lentil

(2009) F. Roy et al.   FOOD RESEARCH INTERNATIONAL

Pulse proteins: Processing, characterization, functional properties and applications in food and feed

(2009) Joyce Boye et al.   FOOD RESEARCH INTERNATIONAL

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris

(2008) Simon R. Ellwood et al.   BMC GENOMICS

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL