Changes in the epigenome and transcriptome of the poplar shoot apical meristem in response to water availability affect preferentially hormone pathways

PRC2 Represses Hormone-Induced Somatic Embryogenesis in Vegetative Tissue of Arabidopsis thaliana

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Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

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The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing

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Water-deficiency conditions differently modulate the methylome of roots and leaves in barley (Hordeum vulgareL.)

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Epigenetic Modifications and Plant Hormone Action

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Genome-wide screen of genes imprinted in sorghum endosperm, and the roles of allelic differential cytosine methylation

(2016) Meishan Zhang et al.   PLANT JOURNAL

Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice

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Meristem maintenance, auxin, jasmonic and abscisic acid pathways as a mechanism for phenotypic plasticity in Antirrhinum majus

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Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements

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Forest tree genomics: 10 achievements from the past 10 years and future prospects

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Variation in genomic methylation in natural populations ofPopulus simoniiis associated with leaf shape and photosynthetic traits

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Epigenomics and bolting tolerance in sugar beet genotypes

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Epigenetic variation and environmental change: Fig. 1.

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Epigenetic Basis of Morphological Variation and Phenotypic Plasticity inArabidopsis thaliana

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Keeping the gate closed: functions of the polycomb repressive complex PRC2 in development

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DNA Methylation within Transcribed Regions

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CG gene body DNA methylation changes and evolution of duplicated genes in cassava

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Genetic variation for leaf morphology, leaf structure and leaf carbon isotope discrimination in European populations of black poplar (Populus nigraL.)

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Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?

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Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response

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Single-base-resolution methylomes of populus trichocarpa reveal the association between DNA methylation and drought stress

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Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis

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RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

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Phenotypic plasticity toward water regime: response of leaf growth and underlying candidate genes inPopulus

(2014) François Bizet et al.   PHYSIOLOGIA PLANTARUM

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

Epigenetic Regulation in Plant Responses to the Environment

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The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

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Epigenetic mechanisms of plant stress responses and adaptation

(2013) Pranav Pankaj Sahu et al.   PLANT CELL REPORTS

Genome-Wide Quantitative Identification of DNA Differentially Methylated Sites in Arabidopsis Seedlings Growing at Different Water Potential

(2013) Alejandro C. Colaneri et al.   PLoS One

Gene body methylation is conserved between plant orthologs and is of evolutionary consequence

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An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication

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Epigenetic regulation of adaptive responses of forest tree species to the environment

(2013) Katharina Bräutigam et al.   Ecology and Evolution

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

(2012) Kelly J Vining et al.   BMC GENOMICS

Drought induces alterations in the stomatal development program in Populus

(2012) Erin T Hamanishi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Methylome of DNase I sensitive chromatin inPopulus trichocarpashoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state

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Stress-Induced Chromatin Changes: A Critical View on Their Heritability

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The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

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Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

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Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to Transposons in Arabidopsis thaliana

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Atypical epigenetic mark in an atypical location: cytosine methylation at asymmetric (CNN) sites within the body of a non-repetitive tomato gene

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Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

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Time course and amplitude of DNA methylation in the shoot apical meristem are critical points for bolting induction in sugar beet and bolting tolerance between genotypes

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Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Clone history shapes Populus drought responses

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Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

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DNA methylation and histone acetylation: genotypic variations in hybrid poplars, impact of water deficit and relationships with productivity

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Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

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Replication timing-related and gene body-specific methylation of active human genes

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(2010) ERIN T. HAMANISHI et al.   PLANT CELL AND ENVIRONMENT

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

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H3K27me3 Profiling of the Endosperm Implies Exclusion of Polycomb Group Protein Targeting by DNA Methylation

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A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests

(2009) Craig D. Allen et al.   FOREST ECOLOGY AND MANAGEMENT

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

Survival of the flexible: hormonal growth control and adaptation in plant development

(2009) Hanno Wolters et al.   NATURE REVIEWS GENETICS

Genotype and time of day shape thePopulusdrought response

(2009) Olivia Wilkins et al.   PLANT JOURNAL

Leaf proteome analysis of eightPopulus ×euramericanagenotypes: Genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins

(2009) Ludovic Bonhomme et al.   PROTEOMICS

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS

The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors

(2008) Daiqing Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Wound-Induced Endogenous Jasmonates Stunt Plant Growth by Inhibiting Mitosis

(2008) Yi Zhang et al.   PLoS One