The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing

Gene Networks Involved in Hormonal Control of Root Development in Arabidopsis thaliana: A Framework for Studying Its Disturbance by Metal Stress

(2015) Stefanie De Smet et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The divining root: moisture-driven responses of roots at the micro- and macro-scale

(2015) Neil E. Robbins et al.   JOURNAL OF EXPERIMENTAL BOTANY

Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit

(2015) Nina Opitz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Length and activity of the root apical meristem revealed in vivo by infrared imaging

(2014) François Bizet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hormonal control of cell division and elongation along differentiation trajectories in roots

(2014) Hirotomo Takatsuka et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phenotypic plasticity toward water regime: response of leaf growth and underlying candidate genes inPopulus

(2014) François Bizet et al.   PHYSIOLOGIA PLANTARUM

A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway

(2014) Koichiro Aya et al.   PLANT AND CELL PHYSIOLOGY

Roles of Gibberellin Catabolism and Signaling in Growth and Physiological Response to Drought and Short-Day Photoperiods in Populus Trees

(2014) Christine Zawaski et al.   PLoS One

Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?

(2014) Dirk De Vos et al.   PLoS Computational Biology

RNA-Seq of Arabidopsis Pollen Uncovers Novel Transcription and Alternative Splicing

(2013) A. E. Loraine et al.   PLANT PHYSIOLOGY

Developmental and Environmental Regulation of Aquaporin Gene Expression across Populus Species: Divergence or Redundancy?

(2013) David Cohen et al.   PLoS One

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

(2013) Cristian Del Fabbro et al.   PLoS One

SCFKMD controls cytokinin signaling by regulating the degradation of type-B response regulators

(2013) H. J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses

(2012) Wolfram G Brenner et al.   BMC PLANT BIOLOGY

Genetic engineering to improve plant performance under drought: physiological evaluation of achievements, limitations, and possibilities

(2012) David W. Lawlor   JOURNAL OF EXPERIMENTAL BOTANY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Ethylene in vegetative development: a tale with a riddle

(2012) Filip Vandenbussche et al.   NEW PHYTOLOGIST

A Triantagonistic Basic Helix-Loop-Helix System Regulates Cell Elongation in Arabidopsis

(2012) M. Ikeda et al.   PLANT CELL

The putative auxin efflux carrierOsPIN3tis involved in the drought stress response and drought tolerance

(2012) Qian Zhang et al.   PLANT JOURNAL

The homeodomain-leucine zipper (HD-Zip) class I transcription factors ATHB7 and ATHB12 modulate abscisic acid signalling by regulating protein phosphatase 2C and abscisic acid receptor gene activities

(2012) Ana Elisa Valdés et al.   PLANT MOLECULAR BIOLOGY

Gibberellin Signaling: A Theme and Variations on DELLA Repression

(2012) A. L. Hauvermale et al.   PLANT PHYSIOLOGY

Role for Apyrases in Polar Auxin Transport in Arabidopsis

(2012) X. Liu et al.   PLANT PHYSIOLOGY

Patterns of root growth acclimation: constant processes, changing boundaries

(2012) Tobias I. Baskin   Wiley Interdisciplinary Reviews-Developmental Biology

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Water deficit and growth. Co-ordinating processes without an orchestrator?

(2011) François Tardieu et al.   CURRENT OPINION IN PLANT BIOLOGY

ABC transporters coordinately expressed during lignification of Arabidopsis stems include a set of ABCBs associated with auxin transport

(2011) M. Kaneda et al.   JOURNAL OF EXPERIMENTAL BOTANY

Generic signal-specific responses: cytokinin and context-dependent cellular responses

(2011) B. Muller   JOURNAL OF EXPERIMENTAL BOTANY

PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1

(2011) Wenqiang Tang et al.   NATURE CELL BIOLOGY

TheArabidopsisC2H2 Zinc Finger INDETERMINATE DOMAIN1/ENHYDROUS Promotes the Transition to Germination by Regulating Light and Hormonal Signaling during Seed Maturation

(2011) J. Allan Feurtado et al.   PLANT CELL

Pause-and-Stop: The Effects of Osmotic Stress on Cell Proliferation during Early Leaf Development inArabidopsisand a Role for Ethylene Signaling in Cell Cycle Arrest

(2011) Aleksandra Skirycz et al.   PLANT CELL

Analysis of Cytokinin Mutants and Regulation of Cytokinin Metabolic Genes Reveals Important Regulatory Roles of Cytokinins in Drought, Salt and Abscisic Acid Responses, and Abscisic Acid Biosynthesis

(2011) Rie Nishiyama et al.   PLANT CELL

TheArabidopsisNAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via theCOR/RDGenes

(2011) So-Dam Yang et al.   PLANT CELL

The Basic Helix-Loop-Helix Transcription Factor MYC2 Directly RepressesPLETHORAExpression during Jasmonate-Mediated Modulation of the Root Stem Cell Niche inArabidopsis

(2011) Qian Chen et al.   PLANT CELL

Monitoring the regulation of gene expression in a growing organ using a fluid mechanics formalism

(2010) Rémy Merret et al.   BMC BIOLOGY

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

(2010) David Cohen et al.   BMC GENOMICS

Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root

(2010) Hironaka Tsukagoshi et al.   CELL

A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity

(2010) Bert De Rybel et al.   CURRENT BIOLOGY

More from less: plant growth under limited water

(2010) Aleksandra Skirycz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

ATHB12, an ABA-Inducible Homeodomain-Leucine Zipper (HD-Zip) Protein of Arabidopsis, Negatively Regulates the Growth of the Inflorescence Stem by Decreasing the Expression of a Gibberellin 20-Oxidase Gene

(2010) Ora Son et al.   PLANT AND CELL PHYSIOLOGY

ABC transporter AtABCG25 is involved in abscisic acid transport and responses

(2010) T. Kuromori et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental Effects on Spatial and Temporal Patterns of Leaf and Root Growth

(2009) Achim Walter et al.   Annual Review of Plant Biology

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Functional Analyses of LONELY GUY Cytokinin-Activating Enzymes Reveal the Importance of the Direct Activation Pathway in Arabidopsis

(2009) T. Kuroha et al.   PLANT CELL

Complexity and coordination of root growth at low water potentials: recent advances from transcriptomic and proteomic analyses

(2009) MINEO YAMAGUCHI et al.   PLANT CELL AND ENVIRONMENT

The primary signaling outputs of brassinosteroids are regulated by abscisic acid signaling

(2009) S. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential

(2008) William G Spollen et al.   BMC PLANT BIOLOGY

Functional genomics of root growth and development in Arabidopsis

(2008) Anjali Iyer-Pascuzzi et al.   CURRENT OPINION IN PLANT BIOLOGY