Hydrologic and geologic history of the Ozark Plateau drive phylogenomic patterns in a cave-obligate salamander

Genomic data detect corresponding signatures of population size change on an ecological time scale in two salamander species

(2017) Schyler O. Nunziata et al.   MOLECULAR ECOLOGY

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence capture and next-generation sequencing of ultraconserved elements in a large-genome salamander

(2016) Catherine E. Newman et al.   MOLECULAR ECOLOGY

Molecular Systematics of the Least Darter (Percidae:Etheostoma microperca): Historical Biogeography and Conservation Implications

(2015) Anthony A. Echelle et al.   COPEIA

Biogeography and colonization history of plethodontid salamanders from the Interior Highlands of eastern North America

(2015) Samuel D. Martin et al.   JOURNAL OF BIOGEOGRAPHY

Ancient river systems and phylogeographical structure in the spring salamander,Gyrinophilus porphyriticus

(2015) Shawn R. Kuchta et al.   JOURNAL OF BIOGEOGRAPHY

Enlarged Multilocus Data set Provides Surprisingly Younger Time of Origin for the Plethodontidae, the Largest Family of Salamanders

(2015) Xing-Xing Shen et al.   SYSTEMATIC BIOLOGY

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing

(2015) Melissa C. Keinath et al.   Scientific Reports

Hellbender Genome Sequences Shed Light on Genomic Expansion at the Base of Crown Salamanders

(2014) C. Sun et al.   Genome Biology and Evolution

Molecular systematics and historical biogeography of the Nocomis biguttatus species group (Teleostei: Cyprinidae): Nuclear and mitochondrial introgression and a cryptic Ozark species

(2014) Anthony A. Echelle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Doomed before they are described? The need for conservation assessments of cryptic species complexes using an amblyopsid cavefish (Amblyopsidae: Typhlichthys) as a case study

(2013) Matthew L. Niemiller et al.   BIODIVERSITY AND CONSERVATION

EVOLUTION OF PAEDOMORPHOSIS IN PLETHODONTID SALAMANDERS: ECOLOGICAL CORRELATES AND RE-EVOLUTION OF METAMORPHOSIS

(2013) Ronald M. Bonett et al.   EVOLUTION

Development, validation and high-throughput analysis of sequence markers in nonmodel species

(2013) P. Zieliński et al.   Molecular Ecology Resources

Unraveling natural versus anthropogenic effects on genetic diversity within the southeastern beach mouse (Peromyscus polionotus niveiventris)

(2012) Håkon M. Kalkvik et al.   CONSERVATION GENETICS

EFFECTS OF CLIMATIC AND GEOLOGICAL PROCESSES DURING THE PLEISTOCENE ON THE EVOLUTIONARY HISTORY OF THE NORTHERN CAVEFISH,AMBLYOPSIS SPELAEA(TELEOSTEI: AMBLYOPSIDAE)

(2012) Matthew L. Niemiller et al.   EVOLUTION

Horizontal and vertical structuring in the dispersal of adult aquatic insects in a fragmented landscape

(2012) Raphael K. Didham et al.   Fundamental and Applied Limnology

Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex

(2012) Eric M. O'Neill et al.   MOLECULAR ECOLOGY

Molecular systematics of Batrachoseps (Caudata, Plethodontidae) in southern California and Baja California: Mitochondrial-nuclear DNA discordance and the evolutionary history of B. major

(2012) Íñigo Martínez-Solano et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid diversification in the North American minnow genus Nocomis

(2012) Brett C. Nagle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Considering alternative life history modes and genetic divergence in conservation: a case study of the Oklahoma salamander

(2011) Sarah L. Emel et al.   CONSERVATION GENETICS

DELIMITING SPECIES USING MULTILOCUS DATA: DIAGNOSING CRYPTIC DIVERSITY IN THE SOUTHERN CAVEFISH, TYPHLICHTHYS SUBTERRANEUS (TELEOSTEI: AMBLYOPSIDAE)

(2011) Matthew L. Niemiller et al.   EVOLUTION

LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders

(2011) Cheng Sun et al.   Genome Biology and Evolution

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

(2011) J. E. McCormack et al.   GENOME RESEARCH

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Systematics of the Etheostoma punctulatum Species Group (Teleostei: Percidae), with Descriptions of Two New Species

(2010) Richard L. Mayden   COPEIA

Explaining long-distance dispersal: effects of dispersal distance on survival and growth in a stream salamander

(2010) Winsor H. Lowe   ECOLOGY

Climatic stability and genetic divergence in the tropical insular lizardAnolis krugi, the Puerto Rican ‘Lagartijo Jardinero de la Montaña’

(2010) JAVIER A. RODRÍGUEZ-ROBLES et al.   MOLECULAR ECOLOGY

Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data

(2010) PIERRE LEGENDRE et al.   Molecular Ecology Resources

Delimiting Species without Nuclear Monophyly in Madagascar's Mouse Lemurs

(2010) David W. Weisrock et al.   PLoS One

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Taxonomic Revision of Cave Crayfishes in the Genus Orconectes, Subgenus Orconectes (Decapoda: Cambaridae) along the Cumberland Plateau, Including a Description of a New Species, Orconectes Barri

(2008) Jennifer E. Buhay et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Linking movement behaviour to dispersal and divergence in plethodontid salamanders

(2008) WINSOR H. LOWE et al.   MOLECULAR ECOLOGY

Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae:Gyrinophilus) inferred from gene genealogies

(2008) MATTHEW L. NIEMILLER et al.   MOLECULAR ECOLOGY

Recovering cryptic diversity and ancient drainage patterns in eastern North America: Historical biogeography of the Notropis rubellus species group (Teleostei: Cypriniformes)

(2007) Peter B. Berendzen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION