Ancient river systems and phylogeographical structure in the spring salamander,Gyrinophilus porphyriticus

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Looking for trees in the forest: summary tree from posterior samples

(2013) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

EVOLUTION OF PAEDOMORPHOSIS IN PLETHODONTID SALAMANDERS: ECOLOGICAL CORRELATES AND RE-EVOLUTION OF METAMORPHOSIS

(2013) Ronald M. Bonett et al.   EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Accelerated rates of climatic-niche evolution underlie rapid species diversification

(2010) Kenneth H. Kozak et al.   ECOLOGY LETTERS

New physical evidence of the role of stream capture in active retreat of the Blue Ridge escarpment, southern Appalachians

(2010) Philip S. Prince et al.   GEOMORPHOLOGY

Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data

(2010) PIERRE LEGENDRE et al.   Molecular Ecology Resources

Use of multiple dispersal pathways facilitates amphibian persistence in stream networks

(2010) E. H. Campbell Grant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Closing the ring: historical biogeography of the salamander ring speciesEnsatina eschscholtzii

(2009) Shawn R. Kuchta et al.   JOURNAL OF BIOGEOGRAPHY

Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographical analysis of the Northern Hemisphere plant clade Caprifolieae

(2009) Stephen A. Smith   JOURNAL OF BIOGEOGRAPHY

Higher-level salamander relationships and divergence dates inferred from complete mitochondrial genomes

(2009) Peng Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

(2008) I. Milne et al.   BIOINFORMATICS

Linking movement behaviour to dispersal and divergence in plethodontid salamanders

(2008) WINSOR H. LOWE et al.   MOLECULAR ECOLOGY

Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae:Gyrinophilus) inferred from gene genealogies

(2008) MATTHEW L. NIEMILLER et al.   MOLECULAR ECOLOGY

Pronounced phylogeographic structure on a small spatial scale: Geomorphological evolution and lineage history in the salamander ring species Ensatina eschscholtzii in central coastal California

(2008) Shawn R. Kuchta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY