Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing

Investigation of a suspected nosocomial transmission of blaKPC3-mediated carbapenem-resistant Klebsiella pneumoniae by whole genome sequencing

(2016) Shangxin Yang et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Characterisation of IncA/C 2 plasmids carrying an In 416 -like integron with the bla VIM-19 gene from Klebsiella pneumoniae ST383 of Greek origin

(2016) Costas C. Papagiannitsis et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Multicentre investigation of carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in German hospitals

(2016) Martin Kaase et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Whole-genome typing and characterization ofblaVIM19-harbouring ST383Klebsiella pneumoniaeby PFGE, whole-genome mapping and WGS

(2016) Julia S. Sabirova et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Tracking inter-institutional spread of NDM and identification of a novel NDM-positive plasmid, pSg1-NDM, using next-generation sequencing approaches

(2016) Wei Xin Khong et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The spread of KPC-producing Enterobacteriaceae in Spain: WGS analysis of the emerging high-risk clones ofKlebsiella pneumoniaeST11/KPC-2, ST101/KPC-2 and ST512/KPC-3

(2016) Jesús Oteo et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones

(2016) Kelly L. Wyres et al.   TRENDS IN MICROBIOLOGY

The global epidemiology of carbapenemase-producing Enterobacteriaceae

(2016) David van Duin et al.   Virulence

First report of nosocomial infection caused by Klebsiella pneumoniae ST147 producing OXA-48 and VEB-8 β-lactamases in Tunisia

(2016) Rym Ouertani et al.   Journal of Global Antimicrobial Resistance

Nosocomial Outbreak of OXA-48-Producing Klebsiella pneumoniae in a Chinese Hospital: Clonal Transmission of ST147 and ST383

(2016) Ling Guo et al.   PLoS One

Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae

(2016) Kai Zhou et al.   Scientific Reports

Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance

(2015) Johann D. D. Pitout et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

(2015) Amy J. Mathers et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae

(2015) Amy J. Mathers et al.   CLINICAL MICROBIOLOGY REVIEWS

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IS1R-Mediated Plasticity of IncL/M Plasmids Leads to the Insertion ofblaOXA-48into the Escherichia coli Chromosome

(2014) R. Beyrouthy et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Molecular epidemiology of OXA-48-producing Klebsiella pneumoniae in France

(2014) E. Liapis et al.   CLINICAL MICROBIOLOGY AND INFECTION

Carbapenemases in Enterobacteriaceae: Types and molecular epidemiology

(2014) Luis Martínez-Martínez et al.   ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA

Molecular Analysis of OXA-48-Carrying Conjugative IncL/M-Like Plasmids in Clinical Isolates of Klebsiella pneumoniae in Ireland

(2014) Karen Power et al.   Microbial Drug Resistance

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

(2014) S. Conlan et al.   Science Translational Medicine

Mutations of theompK36Porin Gene and Promoter Impact Responses of Sequence Type 258, KPC-2-Producing Klebsiella pneumoniae Strains to Doripenem and Doripenem-Colistin

(2013) Cornelius J. Clancy et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Dissemination of blaVIM in Greece at the peak of the epidemic of 2005–2006: clonal expansion of Klebsiella pneumoniae clonal complex 147

(2013) C.M. Hasan et al.   CLINICAL MICROBIOLOGY AND INFECTION

Characterization of pKP1780, a novel IncR plasmid from the emerging Klebsiella pneumoniae ST147, encoding the VIM-1 metallo-β-lactamase

(2013) C. C. Papagiannitsis et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

(2012) Alexandre P Francisco et al.   BMC BIOINFORMATICS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

OXA-48-like carbapenemases: the phantom menace

(2012) L. Poirel et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Molecular characterization of blaNDM-1 in an Acinetobacter baumannii strain isolated in Germany in 2007

(2011) Yvonne Pfeifer et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

An update of the evolving epidemic of blaKPC-2-carrying Klebsiella pneumoniae in Greece (2009-10)

(2011) P. Giakkoupi et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes

(2009) A. Moura et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Emergence of carbapenem-non-susceptible extended-spectrum  -lactamase-producing Klebsiella pneumoniae isolates at the university hospital of Tubingen, Germany

(2009) S. Grobner et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Virulent Clones of Klebsiella pneumoniae: Identification and Evolutionary Scenario Based on Genomic and Phenotypic Characterization

(2009) Sylvain Brisse et al.   PLoS One