The spread of KPC-producing Enterobacteriaceae in Spain: WGS analysis of the emerging high-risk clones ofKlebsiella pneumoniaeST11/KPC-2, ST101/KPC-2 and ST512/KPC-3

Phylogeny, resistome and mobile genetic elements of emergent OXA-48 and OXA-245Klebsiella pneumoniaeclones circulating in Spain

(2016) María Pérez-Vázquez et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance

(2015) Johann D. D. Pitout et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prospective Multicenter Study of Carbapenemase-Producing Enterobacteriaceae from 83 Hospitals in Spain Reveals HighIn VitroSusceptibility to Colistin and Meropenem

(2015) Jesús Oteo et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Clonal dissemination of multilocus sequence type ST15 KPC-2-producingKlebsiella pneumoniaein Bulgaria

(2015) Rumyana Markovska et al.   APMIS

Molecular epidemiology and characterization of an outbreak causing Klebsiella pneumoniae clone carrying chromosomally located bla CTX-M-15 at a German University-Hospital

(2015) Stephen E. Mshana et al.   BMC MICROBIOLOGY

Molecular epidemiology of carbapenem resistant Enterobacteriaceae in Valle d’Aosta region, Italy, shows the emergence of KPC-2 producing Klebsiella pneumoniae clonal complex 101 (ST101 and ST1789)

(2015) Mariateresa Del Franco et al.   BMC MICROBIOLOGY

The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae

(2015) Amy J. Mathers et al.   CLINICAL MICROBIOLOGY REVIEWS

Carbapenemase-producingEnterobacteriaceaein Europe: assessment by national experts from 38 countries, May 2015

(2015) Barbara Albiger et al.   Eurosurveillance

Large Nosocomial Outbreak of Colistin-Resistant, Carbapenemase-Producing Klebsiella pneumoniae Traced to Clonal Expansion of anmgrBDeletion Mutant

(2015) Tommaso Giani et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomically Informed Surveillance for Carbapenem-Resistant Enterobacteriaceae in a Health Care System

(2015) Nicole D. Pecora et al.   mBio

Doripenem, Gentamicin, and Colistin, Alone and in Combinations, against Gentamicin-Susceptible, KPC-Producing Klebsiella pneumoniae Strains with VariousompK36Genotypes

(2014) Cornelius J. Clancy et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

First Report of a Clinical, Multidrug-Resistant Enterobacteriaceae Isolate Coharboring Fosfomycin Resistance GenefosA3and Carbapenemase GeneblaKPC-2on the Same Transposon, Tn1721

(2014) Gang Li et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

MgrB Inactivation Is a Common Mechanism of Colistin Resistance in KPC-Producing Klebsiella pneumoniae of Clinical Origin

(2014) Antonio Cannatelli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Treating infections caused by carbapenemase-producing Enterobacteriaceae

(2014) L.S. Tzouvelekis et al.   CLINICAL MICROBIOLOGY AND INFECTION

The difficult-to-control spread of carbapenemase producers among Enterobacteriaceae worldwide

(2014) P. Nordmann et al.   CLINICAL MICROBIOLOGY AND INFECTION

Evolution of carbapenemase-producing Enterobacteriaceae at the global and national level: What should be expected in the future?

(2014) Jesús Oteo et al.   ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA

Colistin resistance superimposed to endemic carbapenem-resistant Klebsiella pneumoniae: a rapidly evolving problem in Italy, November 2013 to April 2014

(2014) M. Monaco et al.   Eurosurveillance

Characterisation of the first ongoing outbreak due to KPC-3-producing Klebsiella pneumoniae (ST512) in Spain

(2014) Lorena López-Cerero et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Persistence of Klebsiella pneumoniae ST258 as the predominant clone of carbapenemase-producing Enterobacteriaceae in post-acute-care hospitals in Israel, 2008-13

(2014) A. Adler et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Diversity of Capsular Polysaccharide Gene Clusters in Kpc-Producing Klebsiella pneumoniae Clinical Isolates of Sequence Type 258 Involved in the Italian Epidemic

(2014) Marco Maria D’Andrea et al.   PLoS One

Epidemic Klebsiella pneumoniae ST258 Is a Hybrid Strain

(2014) L. Chen et al.   mBio

Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences

(2014) Val F. Lanza et al.   PLoS Genetics

Carbapenemase-Producing Enterobacteriaceae in Spain in 2012

(2013) Jesús Oteo et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Development of the EUCAST disk diffusion antimicrobial susceptibility testing method and its implementation in routine microbiology laboratories

(2013) E. Matuschek et al.   CLINICAL MICROBIOLOGY AND INFECTION

Carbapenemase-producing Enterobacteriaceae in Europe: a survey among national experts from 39 countries, February 2013

(2013) C Glasner et al.   Eurosurveillance

Multiclonal dispersal of KPC genes following the emergence of non-ST258 KPC-producing Klebsiella pneumoniae clones in Madrid, Spain

(2013) P. Ruiz-Garbajosa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Outbreak Caused by an Ertapenem-Resistant, CTX-M-15-Producing Klebsiella pneumoniae Sequence Type 101 Clone Carrying an OmpK36 Porin Variant

(2013) A. Poulou et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases

(2013) L Silvia Munoz-Price et al.   LANCET INFECTIOUS DISEASES

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Rapid evolution and spread of carbapenemases among Enterobacteriaceae in Europe

(2012) R. Cantón et al.   CLINICAL MICROBIOLOGY AND INFECTION

Complete Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a Multidrug-Resistant Strain Isolated from Human Sputum

(2012) P. Liu et al.   JOURNAL OF BACTERIOLOGY

Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing

(2012) E. S. Snitkin et al.   Science Translational Medicine

Chromosome-Encoded AmpC and CTX-M Extended-Spectrum β-Lactamases in Clinical Isolates ofProteus mirabilisfrom Korea

(2011) Wonkeun Song et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

First Outbreak of a Plasmid-Mediated Carbapenem-Hydrolyzing OXA-48 β-Lactamase in Klebsiella pneumoniae in Spain

(2011) Cristina Pitart et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Clonal dissemination of Klebsiella pneumoniae ST258 harbouring KPC-2 in Argentina

(2011) S.A. Gomez et al.   CLINICAL MICROBIOLOGY AND INFECTION

Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2

(2011) Michael A. Bachman et al.   INFECTION AND IMMUNITY

An update of the evolving epidemic of blaKPC-2-carrying Klebsiella pneumoniae in Greece (2009-10)

(2011) P. Giakkoupi et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bacterial epidemiology and biology - lessons from genome sequencing

(2011) Julian Parkhill et al.   GENOME BIOLOGY

Characterisation of the CTX-M-15-encoding gene in Klebsiella pneumoniae strains from the Barcelona metropolitan area: plasmid diversity and chromosomal integration

(2010) Alicia Coelho et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Emergence of blaKPC-3-Tn4401a associated with a pKPN3/4-like plasmid within ST384 and ST388 Klebsiella pneumoniae clones in Spain

(2010) T. Curiao et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Emergence of Klebsiella pneumoniae ST258 with KPC-2 in Poland

(2009) A. Baraniak et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Chromosomal Integration of the Extended-Spectrum  -Lactamase Gene blaCTX-M-15 in Salmonella enterica Serotype Concord Isolates from Internationally Adopted Children

(2009) L. Fabre et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Novel Genetic Environment of the Carbapenem-Hydrolyzing  -Lactamase KPC-2 among Enterobacteriaceae in China

(2009) P. Shen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome Sequencing and Comparative Analysis of Klebsiella pneumoniae NTUH-K2044, a Strain Causing Liver Abscess and Meningitis

(2009) K.-M. Wu et al.   JOURNAL OF BACTERIOLOGY

Genetic Structures at the Origin of Acquisition of the  -Lactamase blaKPC Gene

(2008) T. Naas et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH