Chance and necessity in the genome evolution of endosymbiotic bacteria of insects

Essentiality Is a Strong Determinant of Protein Rates of Evolution during Mutation Accumulation Experiments inEscherichia coli

(2016) David Alvarez-Ponce et al.   Genome Biology and Evolution

The Molecular Chaperone DnaK Is a Source of Mutational Robustness

(2016) José Aguilar-Rodríguez et al.   Genome Biology and Evolution

DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes

(2016) A. Samer Kadibalban et al.   Genome Biology and Evolution

The Expanding Landscape of Moonlighting Proteins in Yeasts

(2016) Carlos Gancedo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fitness Trade-Offs Determine the Role of the Molecular Chaperonin GroEL in Buffering Mutations

(2015) Beatriz Sabater-Muñoz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

(2015) Gordon M. Bennett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SymbioGenomesDB: a database for the integration and access to knowledge on host–symbiont relationships

(2015) Mariana Reyes-Prieto et al.   Database-The Journal of Biological Databases and Curation

Abiotic Stress Resistance, a Novel Moonlighting Function of Ribosomal Protein RPL44 in the Halophilic Fungus Aspergillus glaucus

(2014) Xiao-Dan Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont

(2014) Atsushi Nakabachi et al.   CURRENT BIOLOGY

Chaperonin 60: a paradoxical, evolutionarily conserved protein family with multiple moonlighting functions

(2013) Brian Henderson et al.   BIOLOGICAL REVIEWS

Comparative Genomics of Blattabacterium cuenoti: The Frozen Legacy of an Ancient Endosymbiont Genome

(2013) Rafael Patiño-Navarrete et al.   Genome Biology and Evolution

ubiJ, a New Gene Required for Aerobic Growth and Proliferation in Macrophage, Is Involved in Coenzyme Q Biosynthesis in Escherichia coli and Salmonella enterica Serovar Typhimurium

(2013) L. Aussel et al.   JOURNAL OF BACTERIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The impact of microbial symbionts on host plant utilization by herbivorous insects

(2013) Allison K. Hansen et al.   MOLECULAR ECOLOGY

Computational analysis of bacterial RNA-Seq data

(2013) Ryan McClure et al.   NUCLEIC ACIDS RESEARCH

Aphid amino acid transporter regulates glutamine supply to intracellular bacterial symbionts

(2013) D. R. G. Price et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic stasis in an ancient symbiosis: genome-scale metabolic networks from two Blattabacterium cuenoti strains, primary endosymbionts of cockroaches

(2012) Carmen González-Domenech et al.   BMC MICROBIOLOGY

Esre: A novel essential non-coding RNA inEscherichia coli

(2012) Zhichao Chen et al.   FEBS LETTERS

Genome Reduction Promotes Increase in Protein Functional Complexity in Bacteria

(2012) Y. D. Kelkar et al.   GENETICS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Cellular mechanism for selective vertical transmission of an obligate insect symbiont at the bacteriocyte-embryo interface

(2012) R. Koga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The central role of the host cell in symbiotic nitrogen metabolism

(2012) S. J. Macdonald et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Reduced Selective Constraint in Endosymbionts: Elevation in Radical Amino Acid Replacements Occurs Genome-Wide

(2011) Jennifer J. Wernegreen   PLoS One

Aphid genome expression reveals host-symbiont cooperation in the production of amino acids

(2011) A. K. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chaperonin-Dependent Accelerated Substitution Rates in Prokaryotes

(2010) David Bogumil et al.   Genome Biology and Evolution

The Effect of Chaperonin Buffering on Protein Evolution

(2010) Tom A. Williams et al.   Genome Biology and Evolution

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

Immunity and other defenses in pea aphids, Acyrthosiphon pisum

(2010) Nicole M Gerardo et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Impact of Host Developmental Age on the Transcriptome of the Symbiotic Bacterium Buchnera aphidicola in the Pea Aphid (Acyrthosiphon pisum)

(2009) J. Bermingham et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Deletional Bias across the Three Domains of Life

(2009) Chih-Horng Kuo et al.   Genome Biology and Evolution

The consequences of genetic drift for bacterial genome complexity

(2009) C.-H. Kuo et al.   GENOME RESEARCH

The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria

(2009) N. A. Moran et al.   SCIENCE

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

The Evolution of the Flagellar Assembly Pathway in Endosymbiotic Bacterial Genomes

(2008) C. Toft et al.   MOLECULAR BIOLOGY AND EVOLUTION