Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology

Closing the gaps on the viral photosystem-I psaDCABgene organization

(2015) Sheila Roitman et al.   ENVIRONMENTAL MICROBIOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses

(2014) E. G. Sakowski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and genome dynamics of marine cyanophages using metagenomic analyses

(2014) Yingfei Ma et al.   Environmental Microbiology Reports

Chaperonin 60: a paradoxical, evolutionarily conserved protein family with multiple moonlighting functions

(2013) Brian Henderson et al.   BIOLOGICAL REVIEWS

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

(2013) Bhakti Dwivedi et al.   BMC EVOLUTIONARY BIOLOGY

Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton

(2013) Helen F Schmidt et al.   ISME Journal

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

(2013) Bonnie L. Hurwitz et al.   PLoS One

Analysis and Phylogeny of Small Heat Shock Proteins from Marine Viruses and Their Cyanobacteria Host

(2013) Halim Maaroufi et al.   PLoS One

Twelve previously unknown phage genera are ubiquitous in global oceans

(2013) K. Holmfeldt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic reprogramming by viruses in the sunlit and dark ocean

(2013) Bonnie L Hurwitz et al.   GENOME BIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The ecology of viruses that infect eukaryotic algae

(2012) Steven M. Short   ENVIRONMENTAL MICROBIOLOGY

An ORFan No More: The Bacteriophage T4 39.2 Gene Product, NwgI, Modulates GroEL Chaperone Function

(2012) D. Ang et al.   GENETICS

Expression and Functional Characterization of the First Bacteriophage-Encoded Chaperonin

(2012) Lidia P. Kurochkina et al.   JOURNAL OF VIROLOGY

The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data

(2012) Matthew G. Links et al.   PLoS One

The Molecular Architecture of the Eukaryotic Chaperonin TRiC/CCT

(2012) Alexander Leitner et al.   STRUCTURE

VIROME: a standard operating procedure for analysis of viral metagenome sequences

(2012) K. Eric Wommack et al.   Standards in Genomic Sciences

A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea

(2011) Mart Krupovic et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A ‘universal’ type II chaperonin PCR detection system for the investigation of Archaea in complex microbial communities

(2011) Bonnie Chaban et al.   ISME Journal

Molecular chaperones in protein folding and proteostasis

(2011) F. Ulrich Hartl et al.   NATURE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

(2010) Beifang Niu et al.   BMC BIOINFORMATICS

Comparative Analysis of the Mosaic Genomes of Tailed Archaeal Viruses and Proviruses Suggests Common Themes for Virion Architecture and Assembly with Tailed Viruses of Bacteria

(2010) Mart Krupovič et al.   JOURNAL OF MOLECULAR BIOLOGY

A simple and efficient method for concentration of ocean viruses by chemical flocculation

(2010) Seth G. John et al.   Environmental Microbiology Reports

Two chaperonin systems in bacterial genomes with distinct ecological roles

(2009) Tom A. Williams et al.   TRENDS IN GENETICS

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH