The maximum penalty criterion for ridge regression: application to the calibration of the force constant in elastic network models

Evolution and characterization of a new reversibly photoswitching chromogenic protein, Dathail

(2016) Patricia S. Langan et al.   JOURNAL OF MOLECULAR BIOLOGY

Mapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography

(2016) Galen J. Correy et al.   STRUCTURE

Active Site and Laminarin Binding in Glycoside Hydrolase Family 55

(2015) Christopher M. Bianchetti et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D

(2014) Federico Forneris et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Characterizing conformation changes in proteins through the torsional elastic response

(2013) Helena G. Dos Santos et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Evaluation of Protein Elastic Network Models Based on an Analysis of Collective Motions

(2013) Edvin Fuglebakk et al.   Journal of Chemical Theory and Computation

Effective Harmonic Potentials: Insights into the Internal Cooperativity and Sequence-Specificity of Protein Dynamics

(2013) Yves Dehouck et al.   PLoS Computational Biology

Measuring and comparing structural fluctuation patterns in large protein datasets

(2012) Edvin Fuglebakk et al.   BIOINFORMATICS

Models with Energy Penalty on Interresidue Rotation Address Insufficiencies of Conventional Elastic Network Models

(2011) Lee-Wei Yang   BIOPHYSICAL JOURNAL

Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins

(2011) Lidio Meireles et al.   PROTEIN SCIENCE

The effects of rigid motions on elastic network model force constants

(2011) Timothy R. Lezon   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluating Elastic Network Models of Crystalline Biological Molecules with Temperature Factors, Correlated Motions, and Diffuse X-Ray Scattering

(2010) Demian Riccardi et al.   BIOPHYSICAL JOURNAL

Choreographing an enzyme's dance

(2010) Janice Villali et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Optimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions

(2010) Jeffrey Hafner et al.   JOURNAL OF CHEMICAL PHYSICS

Torsional Network Model: Normal Modes in Torsion Angle Space Better Correlate with Conformation Changes in Proteins

(2010) Raul Mendez et al.   PHYSICAL REVIEW LETTERS

Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology

(2010) Timothy R. Lezon et al.   PLoS Computational Biology

Application of Elastic Network Models to Proteins in the Crystalline State

(2009) Demian Riccardi et al.   BIOPHYSICAL JOURNAL

All-Atom Contact Model for Understanding Protein Dynamics from Crystallographic B-Factors

(2009) Da-Wei Li et al.   BIOPHYSICAL JOURNAL

The role of dynamic conformational ensembles in biomolecular recognition

(2009) David D Boehr et al.   Nature Chemical Biology

Protein elastic network models and the ranges of cooperativity

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein-protein crystal-packing contacts

(2009) Oliviero Carugo et al.   PROTEIN SCIENCE

Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behavior

(2009) Z. Nevin Gerek et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways

(2009) Antonio del Sol et al.   STRUCTURE

Allosteric regulation and catalysis emerge via a common route

(2008) Nina M Goodey et al.   Nature Chemical Biology

Macromolecular crystal twinning, lattice disorders and multiple crystals1

(2008) J.R. Helliwell   Crystallography Reviews