Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology

Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics

(2009) Lee-Wei Yang et al.   BIOINFORMATICS

Conformational averaging in structural biology: issues, challenges and computational solutions

(2009) Daniela Kruschel et al.   Molecular BioSystems

The role of dynamic conformational ensembles in biomolecular recognition

(2009) David D Boehr et al.   Nature Chemical Biology

Protein elastic network models and the ranges of cooperativity

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

(2009) A. Bakan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations

(2009) Lin Liu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Normal-mode-based modeling of allosteric couplings that underlie cyclic conformational transition in F1ATPase

(2009) Wenjun Zheng   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Observing biological dynamics at atomic resolution using NMR

(2009) Anthony K. Mittermaier et al.   TRENDS IN BIOCHEMICAL SCIENCES

A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family

(2009) Gregory D. Friedland et al.   PLoS Computational Biology

Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL

(2009) Zheng Yang et al.   PLoS Computational Biology

Toward a Molecular Understanding of the Anisotropic Response of Proteins to External Forces: Insights from Elastic Network Models

(2008) Eran Eyal et al.   BIOPHYSICAL JOURNAL

Systematic Multiscale Parameterization of Heterogeneous Elastic Network Models of Proteins

(2008) Edward Lyman et al.   BIOPHYSICAL JOURNAL

Inference of the solvation energy parameters of amino acids using maximum entropy approach

(2008) Trinh X. Hoang et al.   JOURNAL OF CHEMICAL PHYSICS

A dynamic view of enzyme catalysis

(2008) Aurora Jiménez et al.   JOURNAL OF MOLECULAR MODELING

Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL

(2008) Chakra Chennubhotla et al.   Molecular BioSystems

COCO: A simple tool to enrich the representation of conformational variability in NMR structures

(2008) Charles A. Laughton et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution

(2008) O. F. Lange et al.   SCIENCE