Outgroup, alignment and modelling improvements indicate that two TNFSF13-like genes existed in the vertebrate ancestor

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Characterisation of the TNF superfamily members CD40L and BAFF in the small-spotted catshark ( Scyliorhinus canicula )

(2015) Ronggai Li et al.   FISH & SHELLFISH IMMUNOLOGY

The CXC chemokine receptors of fish: Insights into CXCR evolution in the vertebrates

(2015) Jun Zou et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Genomic data do not support comb jellies as the sister group to all other animals

(2015) Davide Pisani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Re-evaluation of the Immunological Big Bang

(2014) Martin F. Flajnik   CURRENT BIOLOGY

The vertebrate muscle-specific RING finger protein family includes MuRF4 - A novel, conserved E3-ubiquitin ligase

(2014) Daniel J. Macqueen et al.   FEBS LETTERS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterisation and expression analysis of B-cell activating factor (BAFF) in spiny dogfish (Squalus acanthias): Cartilaginous fish BAFF has a unique extra exon that may impact receptor binding

(2011) Ronggai Li et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The first BAFF gene cloned from the cartilaginous fish

(2011) Wenhua Ren et al.   FISH & SHELLFISH IMMUNOLOGY

Overview of the transcriptome profiles identified in hagfish, shark, and bichir: current issues arising from some nonmodel vertebrate taxa

(2011) Masaki Takechi et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Dual nature of the adaptive immune system in lampreys

(2009) Peng Guo et al.   NATURE

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE