Overview of the transcriptome profiles identified in hagfish, shark, and bichir: current issues arising from some nonmodel vertebrate taxa

Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes

(2010) R Craig Albertson et al.   BMC EVOLUTIONARY BIOLOGY

Genomic analysis of expressed sequence tags in American black bear Ursus americanus

(2010) Sen Zhao et al.   BMC GENOMICS

Digital gene expression analysis of the zebra finch genome

(2010) Robert Ekblom et al.   BMC GENOMICS

Analysis and functional annotation of expressed sequence tags from in vitro cell lines of elasmobranchs: Spiny dogfish shark (Squalus acanthias) and little skate (Leucoraja erinacea)

(2010) Angela Parton et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Molecular mechanisms of cranial neural crest cell migration and patterning in craniofacial development

(2010) M. Minoux et al.   DEVELOPMENT

Competent stripes for diverse positions of limbs/fins in gnathostome embryos

(2010) Sayuri Yonei-Tamura et al.   EVOLUTION & DEVELOPMENT

Palaeophylogenomics of the Vertebrate Ancestor--Impact of Hidden Paralogy on Hagfish and Lamprey Gene Phylogeny

(2010) S. Kuraku   INTEGRATIVE AND COMPARATIVE BIOLOGY

History of studies on mammalian middle ear evolution: A comparative morphological and developmental biology perspective

(2010) Masaki Takechi et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Evolution of Hox Gene Clusters in Gnathostomes: Insights from a Survey of a Shark (Scyliorhinus canicula) Transcriptome

(2010) S. Oulion et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary Origin and Phylogeny of the Modern Holocephalans (Chondrichthyes: Chimaeriformes): A Mitogenomic Perspective

(2010) J. G. Inoue et al.   MOLECULAR BIOLOGY AND EVOLUTION

Germ layer patterning in bichir and lamprey; an insight into its evolution in vertebrates

(2009) Masaki Takeuchi et al.   DEVELOPMENTAL BIOLOGY

Distinct Regulatory Cascades Govern Extraocular and Pharyngeal Arch Muscle Progenitor Cell Fates

(2009) Ramkumar Sambasivan et al.   DEVELOPMENTAL CELL

The evolution of gnathostome development: Insight from chondrichthyan embryology

(2009) J. Andrew Gillis et al.   GENESIS

The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication

(2009) Shigehiro Kuraku et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Programmed loss of millions of base pairs from a vertebrate genome

(2009) J. J. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shared developmental mechanisms pattern the vertebrate gill arch and paired fin skeletons

(2009) J. A. Gillis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into Cyclostome Phylogenomics: Pre-2R or Post-2R

(2009) Shigehiro Kuraku   ZOOLOGICAL SCIENCE

The Origin of the Vertebrate Jaw: Neoclassical Ideas Versus Newer, Development-Based Ideas

(2009) Jon Mallatt   ZOOLOGICAL SCIENCE

Developmental Biology of Hagfishes, with a Report on Newly Obtained Embryos of the Japanese Inshore Hagfish, Eptatretus burgeri

(2009) Kinya G. Ota et al.   ZOOLOGICAL SCIENCE

Hagfish (cyclostomata, vertebrata): Searching for the ancestral developmental plan of vertebrates

(2008) Shigeru Kuratani et al.   BIOESSAYS

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

(2008) Ben F Koop et al.   BMC GENOMICS

Skeletogenesis in Xenopus tropicalis: Characteristic bone development in an anuran amphibian

(2008) Shinichirou Miura et al.   BONE

Mesenchyme-dependent BMP signaling directs the timing of mandibular osteogenesis

(2008) A. E. Merrill et al.   DEVELOPMENT

The genesis of cartilage size and shape during development and evolution

(2008) B. F. Eames et al.   DEVELOPMENT

Evolution of Otx paralogue usages in early patterning of the vertebrate head

(2008) Yoko Suda et al.   DEVELOPMENTAL BIOLOGY

Regulation of Canonical Wnt Signaling by Brachyury Is Essential for Posterior Mesoderm Formation

(2008) Benjamin L. Martin et al.   DEVELOPMENTAL CELL

Amphioxus and the evolution of head segmentation

(2008) L. Z. Holland et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Historical hypotheses regarding segmentation of the vertebrate head

(2008) R. G. Northcutt   INTEGRATIVE AND COMPARATIVE BIOLOGY

Is the vertebrate head segmented?--evolutionary and developmental considerations

(2008) S. Kuratani   INTEGRATIVE AND COMPARATIVE BIOLOGY

Large Number of Ultraconserved Elements Were Already Present in the Jawed Vertebrate Ancestor

(2008) J. Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gnathostome Phylogenomics Utilizing Lungfish EST Sequences

(2008) B. M. Hallstrom et al.   MOLECULAR BIOLOGY AND EVOLUTION

Timing of Genome Duplications Relative to the Origin of the Vertebrates: Did Cyclostomes Diverge before or after?

(2008) S. Kuraku et al.   MOLECULAR BIOLOGY AND EVOLUTION

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Development of the cerebellar body in sharks: Spatiotemporal relations of Pax6 expression, cell proliferation and differentiation

(2008) Isabel Rodríguez-Moldes et al.   NEUROSCIENCE LETTERS

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Dealing with incongruence in phylogenomic analyses

(2008) N. Galtier et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark

(2008) S. Kuraku et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An endothelin-1 switch specifies maxillomandibular identity

(2008) T. Sato et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tangentially migrating GABAergic cells of subpallial origin invade massively the pallium in developing sharks

(2007) Iván Carrera et al.   BRAIN RESEARCH BULLETIN

Primitive versus derived traits in the developmental program of the vertebrate head: views from cyclostome developmental studies

(2007) Shigeru Kuratani et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION