Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

(2016) Matthew L Bendall et al.   ISME Journal

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

(2015) Kate S Baker et al.   LANCET INFECTIOUS DISEASES

Chlamydia trachomatisVirulence Factor CT135 is Stablein vivobut Highly Polymorphicin vitro

(2015) Christine Bonner et al.   Pathogens and Disease

Global Estimates of the Prevalence and Incidence of Four Curable Sexually Transmitted Infections in 2012 Based on Systematic Review and Global Reporting

(2015) Lori Newman et al.   PLoS One

Whole-genome enrichment and sequencing of Chlamydia trachomatisdirectly from clinical samples

(2014) Mette T Christiansen et al.   BMC INFECTIOUS DISEASES

Evolution, phylogeny, and molecular epidemiology of Chlamydia

(2014) Alexandra Nunes et al.   INFECTION GENETICS AND EVOLUTION

Mesoporous silicon sponge as an anti-pulverization structure for high-performance lithium-ion battery anodes

(2014) Xiaolin Li et al.   Nature Communications

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Genomic and phenotypic characterization of in vitro-generated Chlamydia trachomatis recombinants

(2013) Brendan M Jeffrey et al.   BMC MICROBIOLOGY

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

(2013) H. M. B. Seth-Smith et al.   GENOME RESEARCH

Chlamydia trachomatis Plasmid-Encoded Pgp4 Is a Transcriptional Regulator of Virulence-Associated Genes

(2013) Lihua Song et al.   INFECTION AND IMMUNITY

Effect of long-term laboratory propagation on Chlamydia trachomatis genome dynamics

(2013) Vítor Borges et al.   INFECTION GENETICS AND EVOLUTION

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes

(2013) C. E. O'Neill et al.   MICROBIOLOGY-SGM

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA

(2013) Helena M B Seth-Smith et al.   Nature Protocols

The Estimated Direct Medical Cost of Selected Sexually Transmitted Infections in the United States, 2008

(2013) Kwame Owusu-Edusei et al.   SEXUALLY TRANSMITTED DISEASES

Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

(2013) T. D. Read et al.   mBio

Directional Evolution of Chlamydia trachomatis towards Niche-Specific Adaptation

(2012) V. Borges et al.   JOURNAL OF BACTERIOLOGY

Population Genomics of Chlamydia trachomatis: Insights on Drift, Selection, Recombination, and Population Structure

(2012) Sandeep J. Joseph et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

(2012) Simon R Harris et al.   NATURE GENETICS

Antibiotic resistance in Neisseria gonorrhoeae: origin, evolution, and lessons learned for the future

(2011) Magnus Unemo et al.   Annals of the New York Academy of Sciences

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Interplay of recombination and selection in the genomes of Chlamydia trachomatis

(2011) Sandeep J Joseph et al.   Biology Direct

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

The Swedish new variant of Chlamydia trachomatis

(2010) Magnus Unemo et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Antibiotic resistance in Chlamydiae

(2010) Kelsi M Sandoz et al.   Future Microbiology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization

(2010) M. Unemo et al.   MICROBIOLOGY-SGM

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

(2009) Helena MB Seth-Smith et al.   BMC GENOMICS