Whole-genome enrichment and sequencing of Chlamydia trachomatisdirectly from clinical samples

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Sequences of multiple bacterial genomes and a Chlamydia trachomatis genotype from direct sequencing of DNA derived from a vaginal swab diagnostic specimen

(2013) P. Andersson et al.   CLINICAL MICROBIOLOGY AND INFECTION

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

(2013) H. M. B. Seth-Smith et al.   GENOME RESEARCH

Presentation of clinically suspected persistent chlamydial infection: a case series

(2013) R A Pitt et al.   INTERNATIONAL JOURNAL OF STD & AIDS

Mutations in hemG Mediate Resistance to Salicylidene Acylhydrazides, Demonstrating a Novel Link between Protoporphyrinogen Oxidase (HemG) and Chlamydia trachomatis Infectivity

(2013) P. Engstrom et al.   JOURNAL OF BACTERIOLOGY

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes

(2013) C. E. O'Neill et al.   MICROBIOLOGY-SGM

Deep Sequencing of Viral Genomes Provides Insight into the Evolution and Pathogenesis of Varicella Zoster Virus and Its Vaccine in Humans

(2013) Daniel P. Depledge et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA

(2013) Helena M B Seth-Smith et al.   Nature Protocols

Chlamydia trachomatis Inclusion Membrane Protein CT228 Recruits Elements of the Myosin Phosphatase Pathway to Regulate Release Mechanisms

(2013) Erika I. Lutter et al.   Cell Reports

Resistance to a Novel Antichlamydial Compound Is Mediated through Mutations inChlamydia trachomatis secY

(2012) Kelsi M. Sandoz et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Female genital Chlamydia trachomatis infection: where are we heading?

(2012) Ioannis Mylonas   ARCHIVES OF GYNECOLOGY AND OBSTETRICS

Bacterial Genomics in Infectious Disease and the Clinical Pathology Laboratory

(2012) Randall J. Olsen et al.   ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE

Differences in the vaginal lactobacilli of postmenopausal women and influence of rectal lactobacilli

(2012) L. Petricevic et al.   CLIMACTERIC

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

(2012) Simon R Harris et al.   NATURE GENETICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Developmental stage-specific metabolic and transcriptional activity of Chlamydia trachomatis in an axenic medium

(2012) A. Omsland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Importance of Vaginal Microbes in Reproductive Health

(2012) Jingru Li et al.   Reproductive Sciences

Bacterial vaginosis: what is physiological in vaginal bacteriology? An update and opinion

(2011) PENTTI A. LEPPÄLUOTO   ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA

Non-coding nucleotides and amino acids near the active site regulate peptide deformylase expression and inhibitor susceptibility in Chlamydia trachomatis

(2011) X. Bao et al.   MICROBIOLOGY-SGM

Chlamydia trachomatis ompA genotypes in male patients with urethritis in Greece – Conservation of the serovar distribution and evidence for mixed infections with Chlamydophila abortus

(2011) Panagiotis Psarrakos et al.   MOLECULAR AND CELLULAR PROBES

Specific Capture and Whole-Genome Sequencing of Viruses from Clinical Samples

(2011) Daniel P. Depledge et al.   PLoS One

Mutations in 23S rRNA and ribosomal protein L4 account for resistance in Chlamydia trachomatis strains selected in vitro by macrolide passage

(2010) H. Zhu et al.   ANDROLOGIA

Antibiotic resistance in Chlamydiae

(2010) Kelsi M Sandoz et al.   Future Microbiology

Diagnosis and Management of Bacterial Vaginosis and Other Types of Abnormal Vaginal Bacterial Flora: A Review

(2010) Gilbert Donders   OBSTETRICAL & GYNECOLOGICAL SURVEY

TypingChlamydia trachomatis: from egg yolk to nanotechnology

(2009) Lisbeth Nørum Pedersen et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Global Burden of Trachoma: A Review

(2009) Matthew J. Burton et al.   PLoS Neglected Tropical Diseases

Trachoma: global magnitude of a preventable cause of blindness

(2008) S P Mariotti et al.   BRITISH JOURNAL OF OPHTHALMOLOGY