Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

(2015) David J. Roach et al.   PLoS Genetics

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Complete Genome Sequence of Klebsiella oxytoca KCTC 1686, Used in Production of 2,3-Butanediol

(2012) S. H. Shin et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Klebsiella oxytoca E718, a New Delhi Metallo- -Lactamase-1-Producing Nosocomial Strain

(2012) T.-L. Liao et al.   JOURNAL OF BACTERIOLOGY

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Influence of Blocking of 2,3-Butanediol Pathway on Glycerol Metabolism for 1,3-Propanediol Production by Klebsiella oxytoca

(2011) Gang Zhang et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Transmission of Extended-Spectrum β-Lactamase Klebsiella oxytoca via the Breathing Circuit of a Transport Ventilator: Root Cause Analysis and Infection Control Recommendations

(2011) S. Schulz-Stübner et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Outbreak of OXY-2-Producing Klebsiella oxytoca in a Renal Transplant Unit

(2008) M. S. Zarate et al.   JOURNAL OF CLINICAL MICROBIOLOGY