High-Resolution Single-Cell Sequencing of Malaria Parasites

Identification and classification of the malaria parasite blood developmental stages, using imaging flow cytometry

(2017) Elya Dekel et al.   METHODS

Modeling Human Population Separation History Using Physically Phased Genomes

(2016) Shiya Song et al.   GENETICS

Indels, structural variation, and recombination drive genomic diversity inPlasmodium falciparum

(2016) Alistair Miles et al.   GENOME RESEARCH

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

(2016) Samuel O. Oyola et al.   MALARIA JOURNAL

Genomic analysis of local variation and recent evolution in Plasmodium vivax

(2016) Richard D Pearson et al.   NATURE GENETICS

Single-cell genome sequencing: current state of the science

(2016) Charles Gawad et al.   NATURE REVIEWS GENETICS

Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data

(2016) John D. O’Brien et al.   PLoS Computational Biology

Modeling Human Population Separation History Using Physically Phased Genomes

(2016) Shiya Song et al.   GENETICS

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data

(2015) Kevin Galinsky et al.   MALARIA JOURNAL

Genetic architecture of artemisinin-resistant Plasmodium falciparum

(2015) Olivo Miotto et al.   NATURE GENETICS

Population, genetic, and antigenic diversity of the apicomplexanEimeria tenellaand their relevance to vaccine development

(2015) Damer P. Blake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Somatic mutation in single human neurons tracks developmental and transcriptional history

(2015) M. A. Lodato et al.   SCIENCE

SNES: single nucleus exome sequencing

(2015) Marco L Leung et al.   GENOME BIOLOGY

estMOI: estimating multiplicity of infection using parasite deep sequencing data

(2014) Samuel A. Assefa et al.   BIOINFORMATICS

Improved Multiple Displacement Amplification (iMDA) and Ultraclean Reagents

(2014) S Motley et al.   BMC GENOMICS

Single-cell genomics for dissection of complex malaria infections

(2014) S. Nair et al.   GENOME RESEARCH

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

(2014) Charles F. A. de Bourcy et al.   PLoS One

Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data

(2013) B. L. Browning et al.   GENETICS

Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells

(2013) Jeff Gole et al.   NATURE BIOTECHNOLOGY

The Geography of Recent Genetic Ancestry across Europe

(2013) Peter Ralph et al.   PLOS BIOLOGY

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

(2012) R. K. Colwell et al.   Journal of Plant Ecology

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples

(2012) Meera Venkatesan et al.   MALARIA JOURNAL

Population genetic correlates of declining transmission in a human pathogen

(2012) Standwell C. Nkhoma et al.   MOLECULAR ECOLOGY

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

(2012) Magnus Manske et al.   NATURE

Close kinship within multiple-genotype malaria parasite infections

(2012) S. C. Nkhoma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites

(2012) Alfred Amambua-Ngwa et al.   PLoS Genetics

The Architecture of Long-Range Haplotypes Shared within and across Populations

(2011) A. Gusev et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tumour evolution inferred by single-cell sequencing

(2011) Nicholas Navin et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

(2011) Tanja Woyke et al.   PLoS One

Exposing malaria in-host diversity and estimating population diversity by capture-recapture using massively parallel pyrosequencing

(2010) J. J. Juliano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA