Transcriptome sequencing analysis of alfalfa reveals CBF genes potentially playing important roles in response to freezing stress

Genome-Wide Investigation of MicroRNAs and Their Targets in Response to Freezing Stress in Medicago sativa L., Based on High-Throughput Sequencing

(2016) Yongjun Shu et al.   G3-Genes Genomes Genetics

De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

(2015) Zhenyan Miao et al.   BMC GENOMICS

The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies

(2015) Jamie A. O’Rourke et al.   BMC GENOMICS

The unified ICE–CBF pathway provides a transcriptional feedback control of freezing tolerance during cold acclimation in Arabidopsis

(2015) Ye Seul Kim et al.   PLANT MOLECULAR BIOLOGY

A tandem array of CBF/DREB1 genes is located in a major freezing tolerance QTL region on Medicago truncatula chromosome 6

(2013) Nadim Tayeh et al.   BMC GENOMICS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Jasmonate Regulates the INDUCER OF CBF EXPRESSION-C-REPEAT BINDING FACTOR/DRE BINDING FACTOR1 Cascade and Freezing Tolerance in Arabidopsis

(2013) Y. Hu et al.   PLANT CELL

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Low-temperature perception leading to gene expression and cold tolerance in higher plants

(2012) Marc R. Knight et al.   NEW PHYTOLOGIST

Molecular physiology and breeding at the crossroads of cold hardiness improvement

(2012) Yves Castonguay et al.   PHYSIOLOGIA PLANTARUM

The dynamic nature of bud dormancy in trees: environmental control and molecular mechanisms

(2012) JANICE E. K. COOKE et al.   PLANT CELL AND ENVIRONMENT

Characterization of two novel cold-inducible K3 dehydrin genes from alfalfa (Medicago sativa spp. sativa L.)

(2012) Marie-Pier Dubé et al.   THEORETICAL AND APPLIED GENETICS

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

(2011) Yi Zheng et al.   BMC BIOINFORMATICS

Comparative studies on tolerance of Medicago truncatula and Medicago falcata to freezing

(2011) Li-Li Zhang et al.   PLANTA

Jasmonate and Phytochrome A Signaling inArabidopsisWound and Shade Responses Are Integrated through JAZ1 Stability

(2010) Frances Robson et al.   PLANT CELL

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

SRAP polymorphisms associated with superior freezing tolerance in alfalfa (Medicago sativa spp. sativa)

(2010) Yves Castonguay et al.   THEORETICAL AND APPLIED GENETICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Oligosaccharin and ABA synergistically affect the acquisition of freezing tolerance in winter wheat

(2009) Alexey I. Zabotin et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Molecular population genetics and gene expression analysis of duplicated CBF genes of Arabidopsis thaliana

(2008) Yen-Heng Lin et al.   BMC PLANT BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Comparative Genomic Sequence and Expression Analyses of Medicago truncatula and Alfalfa Subspecies falcata COLD-ACCLIMATION-SPECIFIC Genes

(2008) J. C. Pennycooke et al.   PLANT PHYSIOLOGY

Increased freezing tolerance through up-regulation of downstream genes via the wheat CBF gene in transgenic tobacco

(2007) Shigeo Takumi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY