De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

A temperature induced lipocalin gene from Medicago falcata (MfTIL1) confers tolerance to cold and oxidative stress

(2015) Xueying He et al.   PLANT MOLECULAR BIOLOGY

RNA-seq transcriptome profiling reveals that Medicago truncatula nodules acclimate N 2 fixation before emerging P deficiency reaches the nodules

(2014) Ricardo A. Cabeza et al.   JOURNAL OF EXPERIMENTAL BOTANY

A cold-induced myo-inositol transporter-like gene confers tolerance to multiple abiotic stresses in transgenic tobacco plants

(2014) Mame Abdou Nahr Sambe et al.   PHYSIOLOGIA PLANTARUM

Abscisic acid, H2O2and nitric oxide interactions mediated cold-inducedS-adenosylmethionine synthetase inMedicago sativasubsp.falcatathat confers cold tolerance through up-regulating polyamine oxidation

(2014) Zhenfei Guo et al.   PLANT BIOTECHNOLOGY JOURNAL

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

(2014) Brice Roux et al.   PLANT JOURNAL

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

PASmiR: a literature-curated database for miRNA molecular regulation in plant response to abiotic stress

(2013) Shihua Zhang et al.   BMC PLANT BIOLOGY

Towards the Identification of New Genes Involved in ABA-Dependent Abiotic Stresses Using Arabidopsis Suppressor Mutants of abh1 Hypersensitivity to ABA during Seed Germination

(2013) Agata Daszkowska-Golec et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The rice MAPKK–MAPK interactome: the biological significance of MAPK components in hormone signal transduction

(2013) Raksha Singh et al.   PLANT CELL REPORTS

The phytohormone crosstalk paradigm takes center stage in understanding how plants respond to abiotic stresses

(2013) Ajay Kohli et al.   PLANT CELL REPORTS

Jasmonate signaling in plant development and defense response to multiple (a)biotic stresses

(2013) Angelo Santino et al.   PLANT CELL REPORTS

The Arabidopsis ETHYLENE RESPONSE FACTOR1 Regulates Abiotic Stress-Responsive Gene Expression by Binding to Different cis-Acting Elements in Response to Different Stress Signals

(2013) M.-C. Cheng et al.   PLANT PHYSIOLOGY

Identification and Analysis of Red Sea Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and Their Association with Stress Responses

(2013) Basel Khraiwesh et al.   PLoS One

Cell- and Tissue-Specific Transcriptome Analyses of Medicago truncatula Root Nodules

(2013) Erik Limpens et al.   PLoS One

Transcriptome Analysis Reveals Crosstalk of Responsive Genes to Multiple Abiotic Stresses in Cotton (Gossypium hirsutum L.)

(2013) Ya-Na Zhu et al.   PLoS One

Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing

(2012) Xuehui Li et al.   BMC GENOMICS

The use of metabolomics to dissect plant responses to abiotic stresses

(2012) Toshihiro Obata et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

A novel Medicago truncatula HD-Zip gene, MtHB2, is involved in abiotic stress responses

(2012) Shiyong Song et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Contrapuntal role of ABA: Does it mediate stress tolerance or plant growth retardation under long-term drought stress?

(2012) Nese Sreenivasulu et al.   GENE

Deep Sequencing Identifies Viral and Wasp Genes with Potential Roles in Replication of Microplitis demolitor Bracovirus

(2012) G. R. Burke et al.   JOURNAL OF VIROLOGY

A cold responsive galactinol synthase gene fromMedicago falcata(MfGolS1) is induced bymyo-inositol and confers multiple tolerances to abiotic stresses

(2012) Chunliu Zhuo et al.   PHYSIOLOGIA PLANTARUM

Two Direct Targets of Cytokinin Signaling Regulate Symbiotic Nodulation in Medicago truncatula

(2012) F. Ariel et al.   PLANT CELL

ArabidopsisPYR/PYL/RCAR Receptors Play a Major Role in Quantitative Regulation of Stomatal Aperture and Transcriptional Response to Abscisic Acid

(2012) Miguel Gonzalez-Guzman et al.   PLANT CELL

Hydrogen peroxide and nitric oxide mediated cold- and dehydration-inducedmyo-inositol phosphate synthase that confers multiple resistances to abiotic stresses

(2012) JIALI TAN et al.   PLANT CELL AND ENVIRONMENT

Expression Dynamics of the Medicago truncatula Transcriptome during the Symbiotic Interaction with Sinorhizobium meliloti: Which Role for Nitric Oxide?

(2012) A. Boscari et al.   PLANT PHYSIOLOGY

An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants

(2012) J. A. O'Rourke et al.   PLANT PHYSIOLOGY

Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding

(2012) A. Broghammer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

(2011) Qiong-Yi Zhao et al.   BMC BIOINFORMATICS

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

(2011) Susanne U Franssen et al.   BMC GENOMICS

Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis

(2011) Yuanhong Han et al.   BMC GENOMICS

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

(2011) Sukhjiwan Kaur et al.   BMC GENOMICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses

(2011) Daofeng Li et al.   BMC PLANT BIOLOGY

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Defining the Transcriptome Assembly and Its Use for Genome Dynamics and Transcriptome Profiling Studies in Pigeonpea (Cajanus cajan L.)

(2011) A. Dubey et al.   DNA RESEARCH

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

System responses to long-term drought and re-watering of two contrasting alfalfa varieties

(2011) Yun Kang et al.   PLANT JOURNAL

Comparative studies on tolerance of Medicago truncatula and Medicago falcata to freezing

(2011) Li-Li Zhang et al.   PLANTA

Transcription Reprogramming during Root Nodule Development in Medicago truncatula

(2011) Sandra Moreau et al.   PLoS One

Abscisic Acid: Emergence of a Core Signaling Network

(2010) Sean R. Cutler et al.   Annual Review of Plant Biology

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Genome-wide analysis of NAC transcription factor family in rice

(2010) Mohammed Nuruzzaman et al.   GENE

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

(2010) Jing Zhao et al.   MOLECULAR CELL

The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice

(2010) Hironori Takasaki et al.   MOLECULAR GENETICS AND GENOMICS

Infection-Specific Activation of theMedicago truncatulaEnod11 Early Nodulin Gene Promoter During Actinorhizal Root Nodulation

(2010) Sergio Svistoonoff et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Research on plant abiotic stress responses in the post-genome era: past, present and future

(2010) Takashi Hirayama et al.   PLANT JOURNAL

Differentiation of Symbiotic Cells and Endosymbionts in Medicago truncatula Nodulation Are Coupled to Two Transcriptome-Switches

(2010) Nicolas Maunoury et al.   PLoS One

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

ABA perception and signalling

(2010) Agepati S. Raghavendra et al.   TRENDS IN PLANT SCIENCE

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice

(2009) Mukesh Jain et al.   FEBS Journal

Recent advances and emerging trends in plant hormone signalling

(2009) Aaron Santner et al.   NATURE

Survival of the flexible: hormonal growth control and adaptation in plant development

(2009) Hanno Wolters et al.   NATURE REVIEWS GENETICS

Coordinating Nodule Morphogenesis with Rhizobial Infection in Legumes

(2008) Giles E.D. Oldroyd et al.   Annual Review of Plant Biology

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Transcriptome analysis of Medicago truncatula leaf senescence: similarities and differences in metabolic and transcriptional regulations as compared with Arabidopsis , nodule senescence and nitric oxide signalling

(2008) Roberto De Michele et al.   NEW PHYTOLOGIST

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL

Comparative Genomic Sequence and Expression Analyses of Medicago truncatula and Alfalfa Subspecies falcata COLD-ACCLIMATION-SPECIFIC Genes

(2008) J. C. Pennycooke et al.   PLANT PHYSIOLOGY

Annotating genomes with massive-scale RNA sequencing

(2008) France Denoeud et al.   GENOME BIOLOGY