Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic

Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry

(2014) Elżbieta Nowak et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Young but not relatively old retrotransposons are preferentially located in gene-rich euchromatic regions in tomato (Solanum lycopersicum) plants

(2014) Yingxiu Xu et al.   PLANT JOURNAL

The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years

(2014) Cédric Moisy et al.   THEORETICAL AND APPLIED GENETICS

Selection of Reference Genes for Expression Analysis in Diuraphis noxia (Hemiptera: Aphididae) Fed on Resistant and Susceptible Wheat Plants

(2014) Deepak K. Sinha et al.   Scientific Reports

Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptus species

(2013) Marcela Mendes Salazar et al.   BMC GENOMICS

Transcriptional Dynamics of LTR Retrotransposons in Early Generation and Ancient Sunflower Hybrids

(2013) Mark C. Ungerer et al.   Genome Biology and Evolution

Structure Prediction and Analysis of DNA Transposon and LINE Retrotransposon Proteins

(2013) György Abrusán et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid

(2013) Elżbieta Nowak et al.   NUCLEIC ACIDS RESEARCH

Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species

(2013) Mathieu Piednoël et al.   PLANT JOURNAL

The tonoplast intrinsic aquaporin (TIP) subfamily of Eucalyptus grandis: Characterization of EgTIP2, a root-specific and osmotic stress-responsive gene

(2013) Marcela I. Rodrigues et al.   PLANT SCIENCE

LTR-retrotransposon activation, IRAP marker development and its potential in genetic diversity assessment of masson pine (Pinus massoniana)

(2013) Fuhua Fan et al.   Tree Genetics & Genomes

Co-evolution of plant LTR-retrotransposons and their host genomes

(2013) Meixia Zhao et al.   Protein & Cell

Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration

(2013) Beatrice Weber et al.   Mobile DNA

Genetic dissection of growth, wood basic density and gene expression in interspecific backcrosses of Eucalyptus grandis and E. urophylla

(2012) Anand Raj Kullan et al.   BMC GENETICS

Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns

(2012) Douglas S Domingues et al.   BMC GENOMICS

Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata

(2012) S. Tsukahara et al.   GENES & DEVELOPMENT

Intrinsic Nucleic Acid-Binding Activity of Chp1 Chromodomain Is Required for Heterochromatic Gene Silencing

(2012) Mayumi Ishida et al.   MOLECULAR CELL

Reference Genes for High-Throughput Quantitative Reverse Transcription–PCR Analysis of Gene Expression in Organs and Tissues of Eucalyptus Grown in Various Environmental Conditions

(2012) Hua Cassan-Wang et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Analysis of Stowaway-Like MITEs in Wheat Reveals High Sequence Conservation, Gene Association, and Genomic Diversification

(2012) B. Yaakov et al.   PLANT PHYSIOLOGY

Ammonium and Urea Transporter Inventory of the Selaginella and Physcomitrella Genomes

(2012) Roberto De Michele et al.   Frontiers in Plant Science

PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKaPredictions

(2011) Mats H. M. Olsson et al.   Journal of Chemical Theory and Computation

Population genetic analysis and phylogeny reconstruction in Eucalyptus (Myrtaceae) using high-throughput, genome-wide genotyping

(2011) Dorothy A. Steane et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Analysis of copy-number variation, insertional polymorphism, and methylation status of the tiniest class I (TRIM) and class II (MITE) transposable element families in various rice strains

(2011) Omer Baruch et al.   PLANT CELL REPORTS

Retroelement Insertional Polymorphism and Genetic Diversity in Medicago sativa Populations Revealed by IRAP and REMAP Markers

(2011) Babak Abdollahi Mandoulakani et al.   PLANT MOLECULAR BIOLOGY REPORTER

A computational study of the dynamics of LTR retrotransposons in the Populus trichocarpa genome

(2011) Rosa Maria Cossu et al.   Tree Genetics & Genomes

Transcriptional activity of transposable elements in maize

(2010) Carlos M Vicient   BMC GENOMICS

Genetic and Epigenetic Dynamics of a Retrotransposon After Allopolyploidization of Wheat

(2010) Z. Kraitshtein et al.   GENETICS

Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species

(2010) T Kawakami et al.   HEREDITY

Dur3 is the major urea transporter in Candida albicans and is co-regulated with the urea amidolyase Dur1,2

(2010) D. H. M. L. P. Navarathna et al.   MICROBIOLOGY-SGM

Mobilization of retrotransposons in synthetic allotetraploid tobacco

(2010) M. Petit et al.   NEW PHYTOLOGIST

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

Molecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance

(2010) S. Hare et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age

(2009) Beatrice Weber et al.   CHROMOSOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Epigenetic Regulation of Transposable Elements in Plants

(2008) Damon Lisch   Annual Review of Plant Biology

Characterization of ten novel Ty1 copia-like retrotransposon families of the grapevine genome

(2008) Cedric Moisy et al.   BMC GENOMICS

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS