Identification of drought-responsive microRNAs in tomato using high-throughput sequencing

Abiotic stress miRNomes in the Triticeae

(2016) Burcu Alptekin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes

(2016) Bilgin Candar-Cakir et al.   PLANT BIOTECHNOLOGY JOURNAL

SMARTER De-Stressed Cereal Breeding

(2016) Haipei Liu et al.   TRENDS IN PLANT SCIENCE

Transcriptomic Changes Drive Physiological Responses to Progressive Drought Stress and Rehydration in Tomato

(2016) Paolo Iovieno et al.   Frontiers in Plant Science

Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

(2015) Boon Huat Cheah et al.   BMC GENOMICS

Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves

(2015) Weibo Jin et al.   BMC PLANT BIOLOGY

Plant miRNAs: biogenesis, organization and origins

(2015) Hikmet Budak et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Role of microRNAs in plant drought tolerance

(2015) Jannatul Ferdous et al.   PLANT BIOTECHNOLOGY JOURNAL

Stress responsive miRNAs and isomiRs in cereals

(2015) Hikmet Budak et al.   PLANT SCIENCE

Wide-genome QTL mapping of fruit quality traits in a tomato RIL population derived from the wild-relative species Solanum pimpinellifolium L.

(2015) Carmen Capel et al.   THEORETICAL AND APPLIED GENETICS

Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum

(2015) Bhubaneswar Pradhan et al.   VIRUS RESEARCH

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

(2015) Xue Cao et al.   BMC GENOMICS

Genome-Wide Identification of MicroRNAs in Leaves and the Developing Head of Four Durum Genotypes during Water Deficit Stress

(2015) Haipei Liu et al.   PLoS One

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data

(2014) Jikai Lei et al.   BIOINFORMATICS

Identification of candidate genes for drought tolerance by whole-genome resequencing in maize

(2014) Jie Xu et al.   BMC PLANT BIOLOGY

microRNA biogenesis, degradation and activity in plants

(2014) Meng Xie et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Transcriptomic, Proteomic, Metabolomic and Functional Genomic Approaches for the Study of Abiotic Stress in Vegetable Crops

(2014) Jing Zhuang et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton

(2014) Fuliang Xie et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome of the stress-tolerant wild tomato species Solanum pennellii

(2014) Anthony Bolger et al.   NATURE GENETICS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

ThemiR156-SPL9-DFRpathway coordinates the relationship between development and abiotic stress tolerance in plants

(2014) Long-Gang Cui et al.   PLANT JOURNAL

RETRACTED ARTICLE: Overexpression of a cotton annexin gene, GhAnn1, enhances drought and salt stress tolerance in transgenic cotton

(2014) Feng Zhang et al.   PLANT MOLECULAR BIOLOGY

Drought footprint on European ecosystems between 1999 and 2010 assessed by remotely sensed vegetation phenology and productivity

(2013) Eva Ivits et al.   GLOBAL CHANGE BIOLOGY

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice

(2013) X. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolution by recombination: breaking up Solanum pennellii introgressions

(2013) Saleh Alseekh et al.   TRENDS IN PLANT SCIENCE

Genomic organization, phylogenetic comparison and expression profiles of annexin gene family in tomato (Solanum lycopersicum)

(2012) Yongen Lu et al.   GENE

Genetic engineering to improve plant performance under drought: physiological evaluation of achievements, limitations, and possibilities

(2012) David W. Lawlor   JOURNAL OF EXPERIMENTAL BOTANY

The role of l-ascorbic acid recycling in responding to environmental stress and in promoting plant growth

(2012) Daniel R. Gallie   JOURNAL OF EXPERIMENTAL BOTANY

Historical drought trends revisited

(2012) Sonia I. Seneviratne   NATURE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

SNP Discovery and Linkage Map Construction in Cultivated Tomato

(2010) K. Shirasawa et al.   DNA RESEARCH

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

(2010) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato

(2010) Pengjuan Gong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Annexins

(2010) Anuphon Laohavisit et al.   NEW PHYTOLOGIST

Differentially Expressed miRNAs Potentially Involved in the Regulation of Defense Mechanism to Drought Stress in Maize Seedlings

(2009) Liya Wei et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The Role of Annexin 1 in Drought Stress in Arabidopsis

(2009) D. Konopka-Postupolska et al.   PLANT PHYSIOLOGY

Identification of cold-inducible microRNAs in plants by transcriptome analysis

(2008) X ZHOU et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Big impacts by small RNAs in plant development

(2008) George Chuck et al.   CURRENT OPINION IN PLANT BIOLOGY

Annexins: multifunctional components of growth and adaptation

(2008) Jennifer C. Mortimer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA