- Home
- Publications
- Publication Search
- Publication Details
Title
microRNA biogenesis, degradation and activity in plants
Authors
Keywords
microRNA, Plants, Biogenesis, Turn over, Translational inhibition, Target Cleavage
Journal
CELLULAR AND MOLECULAR LIFE SCIENCES
Volume 72, Issue 1, Pages 87-99
Publisher
Springer Nature
Online
2014-09-10
DOI
10.1007/s00018-014-1728-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis
- (2014) Nicolas G. Bologna et al. Annual Review of Plant Biology
- Identification of RNA silencing components in soybean and sorghum
- (2014) Xiang Liu et al. BMC BIOINFORMATICS
- Seeing the forest for the trees: annotating small RNA producing genes in plants
- (2014) Ceyda Coruh et al. CURRENT OPINION IN PLANT BIOLOGY
- Analysis of Complementarity Requirements for Plant MicroRNA Targeting Using a Nicotiana benthamiana Quantitative Transient Assay
- (2014) Q. Liu et al. PLANT CELL
- Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots
- (2014) D. Muraro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage
- (2014) G. Ren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Determinants beyond Both Complementarity and Cleavage Govern MicroR159 Efficacy in Arabidopsis
- (2014) Junyan Li et al. PLoS Genetics
- Developmentally regulated expression and complex processing of barley pri-microRNAs
- (2013) Katarzyna Kruszka et al. BMC GENOMICS
- MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis
- (2013) Shengben Li et al. CELL
- A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis
- (2013) Xueying Wu et al. CELL RESEARCH
- Artificial microRNAs reveal cell-specific differences in small RNA activity in pollen
- (2013) Robert Grant-Downton et al. CURRENT BIOLOGY
- Introns of plant pri-miRNAs enhance miRNA biogenesis
- (2013) Dawid Bielewicz et al. EMBO REPORTS
- Enhanced microRNA accumulation through stemloop-adjacent introns
- (2013) Rebecca Schwab et al. EMBO REPORTS
- Identification and analysis of the proximal promoters of microRNA genes in Arabidopsis
- (2013) Xin Zhao et al. GENOMICS
- Molecular Insights into microRNA-Mediated Translational Repression in Plants
- (2013) Hiro-oki Iwakawa et al. MOLECULAR CELL
- Crystal Structure of Arabidopsis thaliana Dawdle Forkhead-Associated Domain Reveals a Conserved Phospho-Threonine Recognition Cleft for Dicer-Like 1 Binding
- (2013) Satoru Machida et al. Molecular Plant
- Contribution of Small RNA Pathway Components in Plant Immunity
- (2013) Jang-Kyun Seo et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1
- (2013) Hongliang Zhu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Dissecting the interactions of SERRATE with RNA and DICER-LIKE 1 in Arabidopsis microRNA precursor processing
- (2013) Y. Iwata et al. NUCLEIC ACIDS RESEARCH
- The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
- (2013) K. D. Raczynska et al. NUCLEIC ACIDS RESEARCH
- Plant MicroRNAs Display Differential 3' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species
- (2013) J. Zhai et al. PLANT CELL
- NOT2 Proteins Promote Polymerase II-Dependent Transcription and Interact with Multiple MicroRNA Biogenesis Factors in Arabidopsis
- (2013) L. Wang et al. PLANT CELL
- Comprehensive Protein-Based Artificial MicroRNA Screens for Effective Gene Silencing in Plants
- (2013) Jian-Feng Li et al. PLANT CELL
- Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs
- (2013) K. Rogers et al. PLANT CELL
- RACK1 scaffold proteins influence miRNA abundance in Arabidopsis
- (2013) Corinna Speth et al. PLANT JOURNAL
- MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis
- (2013) Fan Jia et al. PLANT MOLECULAR BIOLOGY
- Identification of Direct Targets of FUSCA3, a Key Regulator of Arabidopsis Seed Development
- (2013) F. Wang et al. PLANT PHYSIOLOGY
- CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts
- (2013) S. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- POWERDRESS and Diversified Expression of the MIR172 Gene Family Bolster the Floral Stem Cell Network
- (2013) Rae Eden Yumul et al. PLoS Genetics
- Fast-Forward Genetics Identifies Plant CPL Phosphatases as Regulators of miRNA Processing Factor HYL1
- (2012) Pablo A. Manavella et al. CELL
- Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis
- (2012) Guodong Ren et al. CURRENT BIOLOGY
- The Arabidopsis Nucleotidyl Transferase HESO1 Uridylates Unmethylated Small RNAs to Trigger Their Degradation
- (2012) Yuanyuan Zhao et al. CURRENT BIOLOGY
- Origins and Evolution of MicroRNA Genes in Plant Species
- (2012) Masafumi Nozawa et al. Genome Biology and Evolution
- Genomewide analysis of intronic microRNAs in rice and Arabidopsis
- (2012) G. D. YANG et al. JOURNAL OF GENETICS
- Stress-Induced Alternative Splicing Provides a Mechanism for the Regulation of MicroRNA Processing in Arabidopsis thaliana
- (2012) Kang Yan et al. MOLECULAR CELL
- The molecular architecture of human Dicer
- (2012) Pick-Wei Lau et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The N domain of Argonaute drives duplex unwinding during RISC assembly
- (2012) Pieter Bas Kwak et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis
- (2012) Samir Ben Chaabane et al. NUCLEIC ACIDS RESEARCH
- Effective Small RNA Destruction by the Expression of a Short Tandem Target Mimic in Arabidopsis
- (2012) J. Yan et al. PLANT CELL
- CDKF;1 and CDKD Protein Kinases Regulate Phosphorylation of Serine Residues in the C-Terminal Domain ofArabidopsisRNA Polymerase II
- (2012) Mohsen Hajheidari et al. PLANT CELL
- Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants
- (2012) A. Carbonell et al. PLANT CELL
- Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection inMedicago truncatula
- (2012) Mauricio Alberto Reynoso et al. PLANT JOURNAL
- Regulation of miR399f Transcription by AtMYB2 Affects Phosphate Starvation Responses in Arabidopsis
- (2012) D. Baek et al. PLANT PHYSIOLOGY
- The Helicase and RNaseIIIa Domains of Arabidopsis Dicer-Like1 Modulate Catalytic Parameters during MicroRNA Biogenesis
- (2012) C. Liu et al. PLANT PHYSIOLOGY
- Identification of Nitrogen Starvation-Responsive MicroRNAs in Arabidopsis thaliana
- (2012) Gang Liang et al. PLoS One
- Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis
- (2012) G. Ren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis
- (2012) X. Zhan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Isoprenoid biosynthesis is required for miRNA function and affects membrane association of ARGONAUTE 1 in Arabidopsis
- (2012) P. Brodersen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Degradation of the antiviral component ARGONAUTE1 by the autophagy pathway
- (2012) B. Derrien et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Critical roles of RNA-binding proteins in miRNA biogenesis in Arabidopsis
- (2012) Guodong Ren et al. RNA Biology
- The role of decapping proteins in the miRNA accumulation inArabidopsis thaliana
- (2012) Kazuki Motomura et al. RNA Biology
- Functions of microRNAs in plant stress responses
- (2012) Ramanjulu Sunkar et al. TRENDS IN PLANT SCIENCE
- Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
- (2011) Basel Khraiwesh et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development
- (2011) Hongliang Zhu et al. CELL
- The Exoribonuclease Nibbler Controls 3′ End Processing of MicroRNAs in Drosophila
- (2011) Nan Liu et al. CURRENT BIOLOGY
- The 3′-to-5′ Exoribonuclease Nibbler Shapes the 3′ Ends of MicroRNAs Bound to Drosophila Argonaute1
- (2011) Bo W. Han et al. CURRENT BIOLOGY
- LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers
- (2011) B. Grigorova et al. DEVELOPMENT
- The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana
- (2011) Yun Ju Kim et al. EMBO JOURNAL
- Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants
- (2011) Taichiro Iki et al. EMBO JOURNAL
- The Ccr4–Not complex
- (2011) Martine A. Collart et al. GENE
- High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
- (2011) N. W. Breakfield et al. GENOME RESEARCH
- Binding of the Cyclophilin 40 Ortholog SQUINT to Hsp90 Protein Is Required for SQUINT Function inArabidopsis
- (2011) Keith W. Earley et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE
- (2011) Satoru Machida et al. NUCLEIC ACIDS RESEARCH
- Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage
- (2011) D.-H. Jeong et al. PLANT CELL
- Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings
- (2011) Wolfgang R. Engelsberger et al. PLANT JOURNAL
- Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis
- (2011) L. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress
- (2010) R. C. Martin et al. JOURNAL OF EXPERIMENTAL BOTANY
- In Vitro Assembly of Plant RNA-Induced Silencing Complexes Facilitated by Molecular Chaperone HSP90
- (2010) Taichiro Iki et al. MOLECULAR CELL
- DNA Methylation Mediated by a MicroRNA Pathway
- (2010) Liang Wu et al. MOLECULAR CELL
- Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
- (2010) Annelie Carlsbecker et al. NATURE
- Form, Function, and Regulation of ARGONAUTE Proteins
- (2010) Allison Mallory et al. PLANT CELL
- Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2
- (2010) L. Yant et al. PLANT CELL
- Global effects of the small RNA biogenesis machinery on theArabidopsis thalianatranscriptome
- (2010) Sascha Laubinger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas
- (2010) Fadia Ibrahim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of Arabidopsis HYPONASTIC LEAVES1 and Its Molecular Implications for miRNA Processing
- (2010) Seong Wook Yang et al. STRUCTURE
- Small RNAs and Their Roles in Plant Development
- (2009) Xuemei Chen Annual Review of Cell and Developmental Biology
- Ars2 Links the Nuclear Cap-Binding Complex to RNA Interference and Cell Proliferation
- (2009) Joshua J. Gruber et al. CELL
- Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis
- (2009) Wanhui Kim et al. CELL RESEARCH
- Identification of MicroRNA Processing Determinants by Random Mutagenesis of Arabidopsis MIR172a Precursor
- (2009) Julieta L. Mateos et al. CURRENT BIOLOGY
- RNA Secondary Structural Determinants of miRNA Precursor Processing in Arabidopsis
- (2009) Liang Song et al. CURRENT BIOLOGY
- Structure Determinants for Accurate Processing of miR172a in Arabidopsis thaliana
- (2009) Schallum Werner et al. CURRENT BIOLOGY
- Small RNAs and developmental timing in plants
- (2009) R Scott Poethig CURRENT OPINION IN GENETICS & DEVELOPMENT
- A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159
- (2009) Nicolás G Bologna et al. EMBO JOURNAL
- Structural insights into mechanisms of the small RNA methyltransferase HEN1
- (2009) Ying Huang et al. NATURE
- Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs
- (2009) Bogna Szarzynska et al. NUCLEIC ACIDS RESEARCH
- Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana
- (2009) Katarzyna Dorota Raczynska et al. NUCLEIC ACIDS RESEARCH
- Biochemical Evidence for Translational Repression by Arabidopsis MicroRNAs
- (2009) E. Lanet et al. PLANT CELL
- Rice MicroRNA Effector Complexes and Targets
- (2009) L. Wu et al. PLANT CELL
- SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis
- (2009) H. Yamasaki et al. PLANT CELL
- Cyclophilin 40 is required for microRNA activity in Arabidopsis
- (2009) M. R. Smith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
- (2009) J. T. Cuperus et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes
- (2009) A. L. Eamens et al. RNA
- Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide
- (2008) Shijun Mi et al. CELL
- Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation
- (2008) Taiowa A. Montgomery et al. CELL
- Big impacts by small RNAs in plant development
- (2008) George Chuck et al. CURRENT OPINION IN PLANT BIOLOGY
- A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development
- (2008) Brian D. Gregory et al. DEVELOPMENTAL CELL
- Two Cap-Binding Proteins CBP20 and CBP80 are Involved in Processing Primary MicroRNAs
- (2008) S. Kim et al. PLANT AND CELL PHYSIOLOGY
- The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis
- (2008) B. Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
- (2008) S. Laubinger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1
- (2008) Z. Dong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
- (2008) H.-H. Liu et al. RNA
- Dual coding of siRNAs and miRNAs by plant transposable elements
- (2008) J. Piriyapongsa et al. RNA
- Widespread Translational Inhibition by Plant miRNAs and siRNAs
- (2008) P. Brodersen et al. SCIENCE
- Degradation of microRNAs by a Family of Exoribonucleases in Arabidopsis
- (2008) Vanitharani Ramachandran et al. SCIENCE
- Plant ARGONAUTES
- (2008) Hervé Vaucheret TRENDS IN PLANT SCIENCE
- SINE RNA Induces Severe Developmental Defects in Arabidopsis thaliana and Interacts with HYL1 (DRB1), a Key Member of the DCL1 Complex
- (2008) Marie-Noëlle Pouch-Pélissier et al. PLoS Genetics
- Argonaute proteins: key players in RNA silencing
- (2007) Gyorgy Hutvagner et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started