Applications of random forest feature selection for fine-scale genetic population assignment

Purging putative siblings from population genetic data sets: a cautionary view

(2017) Robin S. Waples et al.   MOLECULAR ECOLOGY

Genetic mixed stock analysis of an interceptory Atlantic salmon fishery in the Northwest Atlantic

(2016) Ian R. Bradbury et al.   FISHERIES RESEARCH

genepopedit: a simple and flexible tool for manipulating multilocus molecular data in R

(2016) Ryan R. E. Stanley et al.   Molecular Ecology Resources

Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic

(2015) Ian R. Bradbury et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

RAD Sequencing Highlights Polygenic Discrimination of Habitat Ecotypes in the Panmictic American Eel

(2015) Scott A. Pavey et al.   CURRENT BIOLOGY

Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring

(2015) Dorte Bekkevold et al.   ICES JOURNAL OF MARINE SCIENCE

Genetic evidence for ecological divergence in kokanee salmon

(2015) Matthew A. Lemay et al.   MOLECULAR ECOLOGY

Integration of Random Forest with population-based outlier analyses provides insight on the genomic basis and evolution of run timing in Chinook salmon (Oncorhynchus tshawytscha)

(2015) Marine S. O. Brieuc et al.   MOLECULAR ECOLOGY

Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction-site associated DNA sequencing for the resolution of complex spatial structure

(2015) Ian R. Bradbury et al.   MOLECULAR ECOLOGY

Phylogenetic approaches to microbial community classification

(2015) Jie Ning et al.   Microbiome

Robustness of Random Forest-based gene selection methods

(2014) Miron Bartosz Kursa   BMC BIOINFORMATICS

Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska

(2014) Wesley A. Larson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci

(2014) Jean-Sébastien Moore et al.   MOLECULAR ECOLOGY

LANDSCAPE GENOMICS IN ATLANTIC SALMON (SALMO SALAR): SEARCHING FOR GENE-ENVIRONMENT INTERACTIONS DRIVING LOCAL ADAPTATION

(2013) Bourret Vincent et al.   EVOLUTION

Gene selection with guided regularized random forest

(2013) Houtao Deng et al.   PATTERN RECOGNITION

Finding Markers That Make a Difference: DNA Pooling and SNP-Arrays Identify Population Informative Markers for Genetic Stock Identification

(2013) Mikhail Ozerov et al.   PLoS One

Overview of random forest methodology and practical guidance with emphasis on computational biology and bioinformatics

(2012) Anne-Laure Boulesteix et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

Classification with correlated features: unreliability of feature ranking and solutions

(2011) Laura Toloşi et al.   BIOINFORMATICS

Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies

(2011) WILLIAM D. TEMPLIN et al.   Molecular Ecology Resources

Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip

(2011) STEN KARLSSON et al.   Molecular Ecology Resources

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Performance of random forest when SNPs are in linkage disequilibrium

(2009) Yan A Meng et al.   BMC BIOINFORMATICS

Genetic population structure of marine fish: mismatch between biological and fisheries management units

(2009) Henning Reiss et al.   FISH AND FISHERIES

An improved method for predicting the accuracy of genetic stock identification

(2008) Eric C. Anderson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

bels: backward elimination locus selection for studies of mixture composition or individual assignment

(2007) JEFFREY F. BROMAGHIN   Molecular Ecology Resources