Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis

DNA methylation in human epigenomes depends on local topology of CpG sites

(2016) Cecilia Lövkvist et al.   NUCLEIC ACIDS RESEARCH

Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells

(2016) Alan Barnicle et al.   PHYSIOLOGICAL GENOMICS

Chromatin accessibility maps of chronic lymphocytic leukaemia identify subtype-specific epigenome signatures and transcription regulatory networks

(2016) André F. Rendeiro et al.   Nature Communications

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Diagnosis and classification of ulcerative colitis

(2014) Karsten Conrad et al.   AUTOIMMUNITY REVIEWS

Diagnosis and classification of Crohn's disease

(2014) Martin W. Laass et al.   AUTOIMMUNITY REVIEWS

MIRA Analysis of RARβ2 Gene Methylation in DNA Circulating in the Blood in Lung Cancer

(2014) K. Yu. Kapitskaya et al.   BULLETIN OF EXPERIMENTAL BIOLOGY AND MEDICINE

The Transcription Factor FOXA2 Suppresses Gastric Tumorigenesis In Vitro and In Vivo

(2014) Chang-Peng Zhu et al.   DIGESTIVE DISEASES AND SCIENCES

Reprogramming of the human intestinal epigenome by surgical tissue transposition

(2014) F. D. Lay et al.   GENOME RESEARCH

An atlas of active enhancers across human cell types and tissues

(2014) Robin Andersson et al.   NATURE

A promoter-level mammalian expression atlas

(2014)   NATURE

A Meta-Analysis of the Relationship Between RARβ Gene Promoter Methylation and Non-Small Cell Lung Cancer

(2014) Feng Hua et al.   PLoS One

Accounting for cellular heterogeneity is critical in epigenome-wide association studies

(2014) Andrew E Jaffe et al.   GENOME BIOLOGY

Global Analysis of DNA Methylation Variation in Adipose Tissue from Twins Reveals Links to Disease-Associated Variants in Distal Regulatory Elements

(2013) Elin Grundberg et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Gene-set analysis is severely biased when applied to genome-wide methylation data

(2013) Paul Geeleher et al.   BIOINFORMATICS

Crosstalk Between the Intestinal Microbiota and the Innate Immune System in Intestinal Homeostasis and Inflammatory Bowel Disease

(2013) Jeremy Dupaul-Chicoine et al.   INFLAMMATORY BOWEL DISEASES

Methylation of the RARB Gene Increases Prostate Cancer Risk in Black Americans

(2013) Deliang Tang et al.   JOURNAL OF UROLOGY

Comparative annotation of functional regions in the human genome using epigenomic data

(2013) Kyoung-Jae Won et al.   NUCLEIC ACIDS RESEARCH

Whole Genome Gene Expression Meta-Analysis of Inflammatory Bowel Disease Colon Mucosa Demonstrates Lack of Major Differences between Crohn's Disease and Ulcerative Colitis

(2013) Atle van Beelen Granlund et al.   PLoS One

The Association of Retinoic Acid Receptor Beta2(RARβ2) Methylation Status and Prostate Cancer Risk: A Systematic Review and Meta-Analysis

(2013) Tianyi Gao et al.   PLoS One

Gut microbiota accelerate tumor growth via c-jun and STAT3 phosphorylation in APC Min/+ mice

(2012) Yinghui Li et al.   CARCINOGENESIS

Abnormal Genetic and Epigenetic Changes in Signal Transducer and Activator of Transcription 4 in the Pathogenesis of Inflammatory Bowel Diseases

(2012) Seung Won Kim et al.   DIGESTIVE DISEASES AND SCIENCES

A functional methylome map of ulcerative colitis

(2012) R. Hasler et al.   GENOME RESEARCH

Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations

(2012) Núria Planell et al.   GUT

Mucosal genome-wide methylation changes in inflammatory bowel disease

(2012) James Cooke et al.   INFLAMMATORY BOWEL DISEASES

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

ChromHMM: automating chromatin-state discovery and characterization

(2012) Jason Ernst et al.   NATURE METHODS

Exon array data analysis using Affymetrix power tools and R statistical software

(2011) H. E. Lockstone   BRIEFINGS IN BIOINFORMATICS

DNA methylation profiling in Barrett’s esophagus and esophageal adenocarcinoma reveals unique methylation signatures and molecular subclasses

(2011) Andrew M. Kaz et al.   Epigenetics

DNA methylation of colon mucosa in ulcerative colitis patients: Correlation with inflammatory status

(2011) Shunsuke Saito et al.   INFLAMMATORY BOWEL DISEASES

Unique patterns of CpG island methylation in inflammatory bowel disease-associated colorectal cancers

(2011) Alexandru V. Olaru et al.   INFLAMMATORY BOWEL DISEASES

Analysis of DNA Methylation in a Three-Generation Family Reveals Widespread Genetic Influence on Epigenetic Regulation

(2011) Jason Gertz et al.   PLoS Genetics

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

(2011) Jordana T Bell et al.   GENOME BIOLOGY

Methylation Status of Genes in Non-Neoplastic Mucosa From Patients With Ulcerative Colitis-Associated Colorectal Cancer

(2010) Megan M Garrity-Park et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

NF-κB Signaling Pathway, Inflammation and Colorectal Cancer

(2010) Soly Wang et al.   Cellular & Molecular Immunology

Identification of disease-associated DNA methylation in intestinal tissues from patients with inflammatory bowel disease

(2010) Z Lin et al.   CLINICAL GENETICS

Function of the intestinal epithelium and its dysregulation in inflammatory bowel disease

(2010) Paul Henderson et al.   INFLAMMATORY BOWEL DISEASES

Upregulation of DNA Methyltransferase-Mediated Gene Silencing, Anchorage-Independent Growth, and Migration of Colon Cancer Cells by Interleukin-6

(2010) E. Foran et al.   MOLECULAR CANCER RESEARCH

Optimized design and data analysis of tag-based cytosine methylation assays

(2010) Masako Suzuki et al.   GENOME BIOLOGY

IL-6 and Stat3 Are Required for Survival of Intestinal Epithelial Cells and Development of Colitis-Associated Cancer

(2009) Sergei Grivennikov et al.   CANCER CELL

CpG islands - ‘A rough guide’

(2009) Robert S. Illingworth et al.   FEBS LETTERS

Immune Responses to the Microbiota at the Intestinal Mucosal Surface

(2009) Breck A. Duerkop et al.   IMMUNITY

Foxa1 and Foxa2 regulate bile duct development in mice

(2009) Zhaoyu Li et al.   JOURNAL OF CLINICAL INVESTIGATION

Epithelial-Mesenchymal Transition: At the Crossroads of Development and Tumor Metastasis

(2008) Jing Yang et al.   DEVELOPMENTAL CELL

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

(2008) Christoph Bock et al.   NUCLEIC ACIDS RESEARCH

The role of signal transducers and activators of transcription in colon cancer

(2007) Lidija Klampfer   Frontiers in Bioscience-Landmark

Map of differential transcript expression in the normal human large intestine

(2007) Lawrence C. LaPointe et al.   PHYSIOLOGICAL GENOMICS